Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1260

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
118,480	+		GFF1259	0.34	+0.1
118,480	+		GFF1259	0.34	-0.6
118,480	+		GFF1259	0.34	+0.0
118,481	-		GFF1259	0.34	-0.4
118,483	+		GFF1259	0.35	+0.1
118,483	+		GFF1259	0.35	+0.2
118,777	+		GFF1259	0.57	-2.2
118,777	+		GFF1259	0.57	-1.0
118,778	-		GFF1259	0.57	+0.1
118,778	-		GFF1259	0.57	+0.2
118,778	-		GFF1259	0.57	-1.7
118,855	+		GFF1259	0.63	-0.1
118,855	+		GFF1259	0.63	-0.6
118,856	-		GFF1259	0.63	-0.5
118,889	-		GFF1259	0.65	-0.9
118,889	-		GFF1259	0.65	+2.2
118,912	+		GFF1259	0.67	-0.0
118,912	+		GFF1259	0.67	-0.2
118,913	-		GFF1259	0.67	+1.0
118,913	-		GFF1259	0.67	+0.3
118,913	-		GFF1259	0.67	+0.3
118,996	+		GFF1259	0.73	-1.7
118,996	+		GFF1259	0.73	+0.4
118,997	-		GFF1259	0.73	+0.2
118,997	-		GFF1259	0.73	-1.0
119,095	+		GFF1259	0.81	+0.4
119,095	+		GFF1259	0.81	+0.8
119,123	-		GFF1259	0.83	+0.2
119,262	+				-2.4
119,344	+				-0.3
119,344	+				-2.2
119,345	-				-0.4
119,345	-				-0.6
119,345	-				+0.3
119,397	-				-0.4
119,671	+		GFF1260	0.22	-1.6
119,672	-		GFF1260	0.23	-2.5
119,789	-		GFF1260	0.36	+0.8
119,813	-		GFF1260	0.39	+0.5
119,884	+		GFF1260	0.47	-0.3
119,885	-		GFF1260	0.47	+0.3
119,885	-		GFF1260	0.47	-0.7
119,885	-		GFF1260	0.47	-1.0
119,885	-		GFF1260	0.47	-0.9
119,885	-		GFF1260	0.47	-0.4
119,885	-		GFF1260	0.47	+0.2
119,885	-		GFF1260	0.47	+0.2
119,983	+		GFF1260	0.58	+0.2
119,983	+		GFF1260	0.58	+0.2
120,143	-		GFF1260	0.76	-1.8
120,143	-		GFF1260	0.76	-0.0
120,220	+		GFF1260	0.85	+0.9
120,229	+		GFF1260	0.86	-0.6
120,350	-				-0.1
120,374	+				-0.1
120,375	-				+0.4
120,437	+				+0.2
120,438	-				-1.8
120,528	-		GFF1261	0.20	+0.5
120,672	-		GFF1261	0.37	+0.1
120,758	+		GFF1261	0.47	+0.8
120,758	+		GFF1261	0.47	+0.9
120,759	-		GFF1261	0.47	-0.1
120,759	-		GFF1261	0.47	-1.0
120,794	+		GFF1261	0.51	+0.3
120,794	+		GFF1261	0.51	-0.7
120,794	+		GFF1261	0.51	+0.2
120,795	-		GFF1261	0.52	+1.0
120,795	-		GFF1261	0.52	-0.2
120,795	-		GFF1261	0.52	+0.6
121,004	+		GFF1261	0.76	-1.0
121,004	+		GFF1261	0.76	+0.2
121,004	+		GFF1261	0.76	-0.4
121,005	-		GFF1261	0.76	-1.0
121,005	-		GFF1261	0.76	+0.3
121,005	-		GFF1261	0.76	-1.0
121,005	-		GFF1261	0.76	+0.4
121,005	-		GFF1261	0.76	-0.6
121,044	-		GFF1261	0.81	+0.9
121,044	-		GFF1261	0.81	+0.3
121,205	+				-0.6
121,205	+				-1.2
121,205	+				-0.3
121,205	+				-0.8
121,206	-				+0.6
121,206	-				+0.5
121,269	-				+0.3