Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1138 and GFF1139 are separated by 881 nucleotides GFF1139 and GFF1140 are separated by 355 nucleotides
GFF1138 - Mobile element protein, at 71,085 to 71,384
GFF1138
GFF1139 - Argininosuccinate lyase (EC 4.3.2.1), at 72,266 to 74,923
GFF1139
GFF1140 - hypothetical protein, at 75,279 to 75,410
GFF1140
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.378 kb on + strand at 71.378 kb on + strand at 71.379 kb on - strand at 71.379 kb on - strand at 71.382 kb on + strand at 71.382 kb on + strand at 71.382 kb on + strand at 71.382 kb on + strand at 71.382 kb on + strand at 71.383 kb on - strand at 71.383 kb on - strand at 71.393 kb on - strand at 71.397 kb on + strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.403 kb on + strand at 71.404 kb on - strand at 71.404 kb on - strand at 71.460 kb on - strand at 71.460 kb on - strand at 71.460 kb on - strand at 71.469 kb on + strand at 71.469 kb on + strand at 71.482 kb on + strand at 71.483 kb on - strand at 71.535 kb on + strand at 71.535 kb on + strand at 71.536 kb on - strand at 71.536 kb on - strand at 71.536 kb on - strand at 71.536 kb on - strand at 71.684 kb on + strand at 71.690 kb on + strand at 71.690 kb on + strand at 71.690 kb on + strand at 71.690 kb on + strand at 71.690 kb on + strand at 71.691 kb on - strand at 71.691 kb on - strand at 71.691 kb on - strand at 71.697 kb on + strand at 71.697 kb on + strand at 71.698 kb on - strand at 71.698 kb on - strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.756 kb on + strand at 71.757 kb on - strand at 71.757 kb on - strand at 71.757 kb on - strand at 71.757 kb on - strand at 71.757 kb on - strand at 71.820 kb on + strand at 71.820 kb on + strand at 71.820 kb on + strand at 71.820 kb on + strand at 71.820 kb on + strand at 71.820 kb on + strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.821 kb on - strand at 71.828 kb on + strand at 71.829 kb on - strand at 71.866 kb on + strand at 71.876 kb on + strand at 71.877 kb on - strand at 71.977 kb on + strand at 71.977 kb on + strand at 71.977 kb on + strand at 71.978 kb on - strand at 72.032 kb on + strand at 72.032 kb on + strand at 72.032 kb on + strand at 72.032 kb on + strand at 72.033 kb on - strand at 72.033 kb on - strand at 72.033 kb on - strand at 72.033 kb on - strand at 72.033 kb on - strand at 72.036 kb on + strand at 72.036 kb on + strand at 72.036 kb on + strand at 72.037 kb on - strand at 72.037 kb on - strand at 72.037 kb on - strand at 72.037 kb on - strand at 72.072 kb on + strand at 72.073 kb on - strand at 72.073 kb on - strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.111 kb on + strand at 72.112 kb on - strand at 72.112 kb on - strand at 72.149 kb on + strand at 72.173 kb on + strand at 72.173 kb on + strand at 72.173 kb on + strand at 72.173 kb on + strand at 72.192 kb on + strand at 72.193 kb on - strand at 72.232 kb on + strand at 72.232 kb on + strand at 72.232 kb on + strand at 72.233 kb on - strand at 72.266 kb on - strand at 72.266 kb on - strand at 72.266 kb on - strand at 72.291 kb on + strand at 72.292 kb on - strand at 72.372 kb on + strand at 72.372 kb on + strand at 72.373 kb on - strand at 72.688 kb on + strand, within GFF1139 at 72.688 kb on + strand, within GFF1139 at 72.688 kb on + strand, within GFF1139 at 72.688 kb on + strand, within GFF1139 at 72.689 kb on - strand, within GFF1139 at 72.714 kb on + strand, within GFF1139 at 72.714 kb on + strand, within GFF1139 at 72.714 kb on + strand, within GFF1139 at 72.715 kb on - strand, within GFF1139 at 72.715 kb on - strand, within GFF1139 at 72.715 kb on - strand, within GFF1139 at 72.738 kb on + strand, within GFF1139 at 72.738 kb on + strand, within GFF1139 at 72.738 kb on + strand, within GFF1139 at 72.739 kb on - strand, within GFF1139 at 72.830 kb on + strand, within GFF1139 at 72.830 kb on + strand, within GFF1139 at 72.830 kb on + strand, within GFF1139 at 72.831 kb on - strand, within GFF1139 at 72.853 kb on + strand, within GFF1139 at 72.853 kb on + strand, within GFF1139 at 72.918 kb on + strand, within GFF1139 at 73.189 kb on + strand, within GFF1139 at 73.287 kb on + strand, within GFF1139 at 73.287 kb on + strand, within GFF1139 at 73.288 kb on - strand, within GFF1139 at 73.288 kb on - strand, within GFF1139 at 73.288 kb on - strand, within GFF1139 at 73.288 kb on - strand, within GFF1139 at 73.319 kb on - strand, within GFF1139 at 73.341 kb on - strand, within GFF1139 at 73.341 kb on - strand, within GFF1139 at 73.343 kb on + strand, within GFF1139 at 73.344 kb on - strand, within GFF1139 at 73.344 kb on - strand, within GFF1139 at 73.344 kb on - strand, within GFF1139 at 73.534 kb on - strand, within GFF1139 at 73.534 kb on - strand, within GFF1139 at 73.627 kb on + strand, within GFF1139 at 73.782 kb on + strand, within GFF1139 at 73.973 kb on + strand, within GFF1139 at 73.974 kb on - strand, within GFF1139 at 73.974 kb on - strand, within GFF1139 at 73.974 kb on - strand, within GFF1139 at 73.974 kb on - strand, within GFF1139 at 74.038 kb on + strand, within GFF1139 at 74.114 kb on + strand, within GFF1139 at 74.115 kb on - strand, within GFF1139 at 74.127 kb on + strand, within GFF1139 at 74.255 kb on + strand, within GFF1139 at 74.255 kb on + strand, within GFF1139 at 74.256 kb on - strand, within GFF1139 at 74.256 kb on - strand, within GFF1139 at 74.371 kb on - strand, within GFF1139 at 74.389 kb on - strand, within GFF1139 at 74.396 kb on + strand, within GFF1139 at 74.409 kb on + strand, within GFF1139 at 74.410 kb on - strand, within GFF1139 at 74.417 kb on + strand, within GFF1139 at 74.418 kb on - strand, within GFF1139 at 74.418 kb on - strand, within GFF1139 at 74.418 kb on - strand, within GFF1139 at 74.433 kb on + strand, within GFF1139 at 74.433 kb on + strand, within GFF1139 at 74.434 kb on - strand, within GFF1139 at 74.678 kb on + strand at 74.678 kb on + strand at 74.678 kb on + strand at 74.679 kb on - strand at 74.679 kb on - strand at 74.699 kb on + strand at 74.700 kb on - strand at 74.820 kb on - strand at 74.820 kb on - strand at 74.820 kb on - strand at 74.861 kb on + strand at 74.861 kb on + strand at 74.862 kb on - strand at 74.884 kb on + strand at 74.885 kb on - strand at 74.950 kb on + strand at 74.950 kb on + strand at 74.951 kb on - strand at 74.951 kb on - strand at 74.951 kb on - strand at 74.951 kb on - strand at 74.951 kb on - strand at 74.951 kb on - strand at 74.951 kb on - strand at 75.143 kb on + strand at 75.144 kb on - strand at 75.155 kb on + strand at 75.161 kb on + strand at 75.161 kb on + strand at 75.161 kb on + strand at 75.162 kb on - strand at 75.162 kb on - strand at 75.162 kb on - strand at 75.162 kb on - strand at 75.162 kb on - strand at 75.162 kb on - strand at 75.170 kb on - strand at 75.238 kb on + strand at 75.238 kb on + strand at 75.238 kb on + strand at 75.238 kb on + strand at 75.238 kb on + strand at 75.239 kb on - strand at 75.239 kb on - strand at 75.239 kb on - strand at 75.239 kb on - strand at 75.239 kb on - strand at 75.408 kb on + strand at 75.409 kb on - strand at 75.476 kb on + strand at 75.476 kb on + strand at 75.477 kb on - strand at 75.477 kb on - strand at 75.477 kb on - strand at 75.477 kb on - strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.491 kb on + strand at 75.492 kb on - strand at 75.492 kb on - strand at 75.492 kb on - strand at 75.492 kb on - strand at 75.492 kb on - strand at 75.495 kb on + strand at 75.495 kb on + strand at 75.496 kb on - strand at 75.496 kb on - strand at 75.496 kb on - strand at 75.496 kb on - strand at 75.496 kb on - strand at 75.496 kb on - strand at 75.591 kb on + strand at 75.591 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.596 kb on + strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.597 kb on - strand at 75.674 kb on + strand at 75.674 kb on + strand at 75.675 kb on - strand at 75.744 kb on + strand at 75.745 kb on - strand at 75.804 kb on + strand at 75.804 kb on + strand at 75.804 kb on + strand at 75.805 kb on + strand at 75.805 kb on - strand at 75.845 kb on + strand at 75.845 kb on + strand at 75.845 kb on + strand at 75.846 kb on - strand at 75.846 kb on - strand at 75.846 kb on - strand at 75.846 kb on - strand at 75.846 kb on - strand at 75.894 kb on + strand at 75.894 kb on + strand at 75.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 71,378 + -1.7 71,378 + -1.4 71,379 - -0.2 71,379 - +0.5 71,382 + -1.3 71,382 + +0.4 71,382 + +0.7 71,382 + +0.9 71,382 + +0.7 71,383 - -0.6 71,383 - -0.4 71,393 - -0.1 71,397 + -0.1 71,398 - +0.2 71,398 - -0.6 71,398 - +0.1 71,399 + -1.9 71,399 + -0.9 71,399 + -0.5 71,399 + -0.3 71,399 + -0.9 71,400 - -0.9 71,400 - +0.2 71,400 - +0.2 71,400 - -0.3 71,400 - -0.9 71,400 - +0.9 71,400 - -1.0 71,403 + +0.1 71,404 - -0.2 71,404 - +1.1 71,460 - -0.4 71,460 - +0.1 71,460 - -0.1 71,469 + -1.2 71,469 + -1.2 71,482 + +0.7 71,483 - +0.2 71,535 + +0.7 71,535 + +1.0 71,536 - -1.3 71,536 - -0.9 71,536 - +0.4 71,536 - +0.6 71,684 + -0.0 71,690 + -2.3 71,690 + +0.9 71,690 + +0.2 71,690 + -0.0 71,690 + +0.6 71,691 - +0.0 71,691 - -1.6 71,691 - -1.9 71,697 + -1.3 71,697 + -0.2 71,698 - +0.1 71,698 - +0.4 71,756 + -0.8 71,756 + -1.7 71,756 + +1.1 71,756 + +0.4 71,756 + -0.2 71,756 + -1.5 71,756 + +0.1 71,757 - -0.2 71,757 - -0.1 71,757 - +0.2 71,757 - +1.7 71,757 - +0.1 71,820 + +0.3 71,820 + -0.4 71,820 + -0.3 71,820 + -0.1 71,820 + -0.9 71,820 + -1.3 71,821 - +0.1 71,821 - +0.1 71,821 - -0.0 71,821 - -0.6 71,821 - -0.0 71,821 - +0.0 71,821 - +0.9 71,821 - +0.6 71,828 + +0.2 71,829 - -0.8 71,866 + +0.8 71,876 + +0.4 71,877 - -0.6 71,977 + -0.5 71,977 + -0.5 71,977 + -0.3 71,978 - +0.1 72,032 + -1.4 72,032 + +0.9 72,032 + -0.1 72,032 + +2.6 72,033 - -0.0 72,033 - -0.3 72,033 - -1.4 72,033 - +0.9 72,033 - -2.7 72,036 + -0.1 72,036 + -1.3 72,036 + -0.4 72,037 - +0.1 72,037 - -0.4 72,037 - +0.0 72,037 - +0.5 72,072 + +1.2 72,073 - -0.8 72,073 - -0.9 72,111 + -0.2 72,111 + +0.7 72,111 + +0.3 72,111 + -0.2 72,112 - +0.4 72,112 - -1.6 72,149 + -0.2 72,173 + -1.3 72,173 + -0.3 72,173 + -0.3 72,173 + -1.0 72,192 + -0.5 72,193 - -1.6 72,232 + -1.6 72,232 + -0.6 72,232 + +0.7 72,233 - +1.0 72,266 - -2.5 72,266 - +1.0 72,266 - -0.1 72,291 + -1.3 72,292 - -0.8 72,372 + +0.4 72,372 + +0.3 72,373 - -0.3 72,688 + GFF1139 0.16 -0.9 72,688 + GFF1139 0.16 -2.0 72,688 + GFF1139 0.16 +0.4 72,688 + GFF1139 0.16 -0.4 72,689 - GFF1139 0.16 -0.8 72,714 + GFF1139 0.17 +1.1 72,714 + GFF1139 0.17 +1.9 72,714 + GFF1139 0.17 -0.9 72,715 - GFF1139 0.17 +0.0 72,715 - GFF1139 0.17 +1.7 72,715 - GFF1139 0.17 +0.4 72,738 + GFF1139 0.18 +1.1 72,738 + GFF1139 0.18 -0.0 72,738 + GFF1139 0.18 -0.4 72,739 - GFF1139 0.18 +0.1 72,830 + GFF1139 0.21 +0.3 72,830 + GFF1139 0.21 +0.2 72,830 + GFF1139 0.21 -0.1 72,831 - GFF1139 0.21 +0.3 72,853 + GFF1139 0.22 +0.6 72,853 + GFF1139 0.22 -0.9 72,918 + GFF1139 0.25 +0.4 73,189 + GFF1139 0.35 -1.7 73,287 + GFF1139 0.38 -1.6 73,287 + GFF1139 0.38 +1.1 73,288 - GFF1139 0.38 -0.9 73,288 - GFF1139 0.38 -2.7 73,288 - GFF1139 0.38 +1.1 73,288 - GFF1139 0.38 -0.1 73,319 - GFF1139 0.40 -1.0 73,341 - GFF1139 0.40 -0.2 73,341 - GFF1139 0.40 -0.3 73,343 + GFF1139 0.41 +2.1 73,344 - GFF1139 0.41 +0.2 73,344 - GFF1139 0.41 +0.9 73,344 - GFF1139 0.41 +0.7 73,534 - GFF1139 0.48 -0.4 73,534 - GFF1139 0.48 -0.1 73,627 + GFF1139 0.51 +0.1 73,782 + GFF1139 0.57 -1.4 73,973 + GFF1139 0.64 +0.0 73,974 - GFF1139 0.64 -1.7 73,974 - GFF1139 0.64 +0.4 73,974 - GFF1139 0.64 -2.6 73,974 - GFF1139 0.64 -0.1 74,038 + GFF1139 0.67 +0.6 74,114 + GFF1139 0.70 -0.1 74,115 - GFF1139 0.70 +0.3 74,127 + GFF1139 0.70 -0.1 74,255 + GFF1139 0.75 -0.3 74,255 + GFF1139 0.75 -2.0 74,256 - GFF1139 0.75 +0.1 74,256 - GFF1139 0.75 -0.0 74,371 - GFF1139 0.79 +0.4 74,389 - GFF1139 0.80 -0.9 74,396 + GFF1139 0.80 +0.9 74,409 + GFF1139 0.81 -0.3 74,410 - GFF1139 0.81 +0.4 74,417 + GFF1139 0.81 +1.0 74,418 - GFF1139 0.81 -0.3 74,418 - GFF1139 0.81 -0.7 74,418 - GFF1139 0.81 +0.2 74,433 + GFF1139 0.82 +0.2 74,433 + GFF1139 0.82 -0.1 74,434 - GFF1139 0.82 +0.1 74,678 + +0.3 74,678 + +0.3 74,678 + +1.8 74,679 - +0.9 74,679 - +0.1 74,699 + -0.9 74,700 - +0.4 74,820 - +1.6 74,820 - -1.5 74,820 - -0.5 74,861 + +0.9 74,861 + -0.1 74,862 - -1.1 74,884 + +0.0 74,885 - +0.3 74,950 + +1.7 74,950 + +1.2 74,951 - -0.1 74,951 - -0.4 74,951 - -2.0 74,951 - -0.1 74,951 - -0.3 74,951 - -0.6 74,951 - +0.4 75,143 + -1.3 75,144 - -1.3 75,155 + +0.1 75,161 + -1.8 75,161 + -1.0 75,161 + -0.3 75,162 - +1.1 75,162 - -0.5 75,162 - -0.7 75,162 - -0.6 75,162 - -1.6 75,162 - +0.2 75,170 - -0.7 75,238 + -1.3 75,238 + -0.3 75,238 + -0.0 75,238 + -1.0 75,238 + -0.8 75,239 - +0.5 75,239 - +0.1 75,239 - -1.4 75,239 - +1.7 75,239 - -0.5 75,408 + -0.2 75,409 - -0.5 75,476 + +0.1 75,476 + +1.2 75,477 - +1.0 75,477 - -0.2 75,477 - -2.2 75,477 - +0.1 75,491 + +0.4 75,491 + -2.1 75,491 + +0.4 75,491 + +0.2 75,491 + +0.0 75,491 + -1.0 75,491 + -0.6 75,492 - -0.5 75,492 - -0.5 75,492 - +0.5 75,492 - +0.2 75,492 - +1.0 75,495 + -1.9 75,495 + +2.0 75,496 - +0.1 75,496 - -0.9 75,496 - -1.3 75,496 - -0.3 75,496 - -0.7 75,496 - -0.9 75,591 + -0.1 75,591 + -0.1 75,596 + -0.9 75,596 + +0.9 75,596 + +1.3 75,596 + +0.0 75,596 + -0.7 75,596 + -0.0 75,596 + -0.7 75,596 + -2.7 75,596 + +0.9 75,596 + +0.7 75,596 + +0.7 75,596 + +0.4 75,596 + -0.2 75,597 - -1.4 75,597 - +0.0 75,597 - -0.2 75,597 - +0.9 75,597 - -0.0 75,597 - -0.3 75,597 - -2.2 75,597 - -0.9 75,597 - -0.6 75,597 - +0.3 75,674 + +0.1 75,674 + -0.2 75,675 - -0.2 75,744 + +0.1 75,745 - -1.7 75,804 + -1.1 75,804 + -0.7 75,804 + -1.0 75,805 + +0.9 75,805 - -1.6 75,845 + -0.5 75,845 + +0.1 75,845 + +0.1 75,846 - -2.4 75,846 - +0.4 75,846 - +2.0 75,846 - -0.5 75,846 - -2.8 75,894 + -0.1 75,894 + -0.2 75,895 - +2.0
Or see this region's nucleotide sequence