Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1013 and GFF1014 overlap by 4 nucleotides GFF1014 and GFF1015 overlap by 4 nucleotides GFF1015 and GFF1016 are separated by 87 nucleotides
GFF1013 - Benzoate transport, ATPase component, at 751,337 to 752,098
GFF1013
GFF1014 - Benzoate transport, inner-membrane translocator precursor, at 752,095 to 753,087
GFF1014
GFF1015 - Benzoate transport, inner-membrane translocator, at 753,084 to 753,947
GFF1015
GFF1016 - Benzoate transport, extracellular ligand-binding receptor, at 754,035 to 755,222
GFF1016
Position (kb) 753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 752.235 kb on - strand, within GFF1014 at 752.402 kb on - strand, within GFF1014 at 752.529 kb on - strand, within GFF1014 at 752.558 kb on + strand, within GFF1014 at 752.559 kb on - strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.720 kb on + strand, within GFF1014 at 752.867 kb on + strand, within GFF1014 at 752.868 kb on - strand, within GFF1014 at 752.868 kb on - strand, within GFF1014 at 753.139 kb on + strand at 753.180 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.472 kb on + strand, within GFF1015 at 753.635 kb on - strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.682 kb on + strand, within GFF1015 at 753.683 kb on - strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.799 kb on + strand, within GFF1015 at 753.814 kb on + strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.815 kb on - strand, within GFF1015 at 753.901 kb on + strand at 754.210 kb on + strand, within GFF1016 at 754.283 kb on - strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.297 kb on + strand, within GFF1016 at 754.298 kb on - strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.326 kb on + strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.327 kb on - strand, within GFF1016 at 754.330 kb on + strand, within GFF1016 at 754.331 kb on - strand, within GFF1016 at 754.378 kb on + strand, within GFF1016 at 754.493 kb on - strand, within GFF1016 at 754.555 kb on + strand, within GFF1016 at 754.857 kb on - strand, within GFF1016 at 754.936 kb on - strand, within GFF1016
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 752,235 - GFF1014 0.14 -0.0 752,402 - GFF1014 0.31 -1.9 752,529 - GFF1014 0.44 -0.7 752,558 + GFF1014 0.47 +0.3 752,559 - GFF1014 0.47 -0.8 752,633 + GFF1014 0.54 -3.3 752,633 + GFF1014 0.54 +0.5 752,720 + GFF1014 0.63 +0.8 752,867 + GFF1014 0.78 +0.1 752,868 - GFF1014 0.78 -0.6 752,868 - GFF1014 0.78 -0.1 753,139 + +1.3 753,180 + GFF1015 0.11 +1.5 753,472 + GFF1015 0.45 +0.1 753,472 + GFF1015 0.45 +1.0 753,635 - GFF1015 0.64 -0.2 753,682 + GFF1015 0.69 +1.1 753,682 + GFF1015 0.69 -0.3 753,682 + GFF1015 0.69 +0.5 753,683 - GFF1015 0.69 +0.2 753,799 + GFF1015 0.83 +0.1 753,799 + GFF1015 0.83 -0.5 753,814 + GFF1015 0.84 -0.7 753,815 - GFF1015 0.85 +0.3 753,815 - GFF1015 0.85 +1.5 753,901 + +0.5 754,210 + GFF1016 0.15 +0.0 754,283 - GFF1016 0.21 +0.1 754,297 + GFF1016 0.22 -0.6 754,297 + GFF1016 0.22 -0.3 754,297 + GFF1016 0.22 +0.2 754,298 - GFF1016 0.22 +0.3 754,326 + GFF1016 0.24 -0.8 754,326 + GFF1016 0.24 -0.1 754,327 - GFF1016 0.25 +0.1 754,327 - GFF1016 0.25 +0.2 754,330 + GFF1016 0.25 -0.1 754,331 - GFF1016 0.25 -1.2 754,378 + GFF1016 0.29 +0.3 754,493 - GFF1016 0.39 +0.4 754,555 + GFF1016 0.44 +0.1 754,857 - GFF1016 0.69 +0.9 754,936 - GFF1016 0.76 +0.2
Or see this region's nucleotide sequence