Strain Fitness in Escherichia fergusonii Becca around EFB2_01859

Experiment: BHIS no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with 14 member community
1,969,160	-		EFB2_01857	0.66	+0.7
1,969,199	+		EFB2_01857	0.71	-0.4
1,969,298	+		EFB2_01857	0.83	+1.7
1,969,298	+		EFB2_01857	0.83	+1.5
1,969,298	+		EFB2_01857	0.83	+0.5
1,969,298	+		EFB2_01857	0.83	-1.6
1,969,298	+		EFB2_01857	0.83	-0.2
1,969,298	+		EFB2_01857	0.83	-1.3
1,969,298	+		EFB2_01857	0.83	+0.7
1,969,298	+		EFB2_01857	0.83	+0.2
1,969,298	+		EFB2_01857	0.83	-0.8
1,969,298	+		EFB2_01857	0.83	-2.1
1,969,298	+		EFB2_01857	0.83	-0.3
1,969,298	+		EFB2_01857	0.83	+0.8
1,969,298	+		EFB2_01857	0.83	-1.1
1,969,298	+		EFB2_01857	0.83	-1.2
1,969,298	+		EFB2_01857	0.83	+0.2
1,969,298	+		EFB2_01857	0.83	-0.9
1,969,298	+		EFB2_01857	0.83	+0.7
1,969,298	+		EFB2_01857	0.83	-2.1
1,969,298	+		EFB2_01857	0.83	+1.2
1,969,298	+		EFB2_01857	0.83	+0.1
1,969,298	+		EFB2_01857	0.83	+0.2
1,969,298	+		EFB2_01857	0.83	-2.0
1,969,298	+		EFB2_01857	0.83	+0.5
1,969,298	+		EFB2_01857	0.83	-0.9
1,969,298	+		EFB2_01857	0.83	+0.7
1,969,298	+		EFB2_01857	0.83	-0.8
1,969,298	+		EFB2_01857	0.83	+1.6
1,969,298	+		EFB2_01857	0.83	-1.1
1,969,298	+		EFB2_01857	0.83	-2.6
1,969,298	+		EFB2_01857	0.83	-0.1
1,969,298	+		EFB2_01857	0.83	-1.0
1,969,298	+		EFB2_01857	0.83	+2.9
1,969,298	+		EFB2_01857	0.83	+0.3
1,969,298	+		EFB2_01857	0.83	+0.7
1,969,298	+		EFB2_01857	0.83	-1.4
1,969,298	+		EFB2_01857	0.83	+1.8
1,969,298	+		EFB2_01857	0.83	-0.7
1,969,298	+		EFB2_01857	0.83	-1.2
1,969,298	+		EFB2_01857	0.83	+1.5
1,969,298	+		EFB2_01857	0.83	-1.3
1,969,298	+		EFB2_01857	0.83	-0.7
1,969,298	+		EFB2_01857	0.83	-1.2
1,969,298	+		EFB2_01857	0.83	+2.4
1,969,298	+		EFB2_01857	0.83	+1.2
1,969,298	+		EFB2_01857	0.83	-1.7
1,969,302	+		EFB2_01857	0.83	+1.4
1,969,302	+		EFB2_01857	0.83	+0.1
1,969,302	+		EFB2_01857	0.83	+0.2
1,969,302	+		EFB2_01857	0.83	-1.1
1,969,302	+		EFB2_01857	0.83	+1.0
1,969,304	+		EFB2_01857	0.84	-0.9
1,969,304	+		EFB2_01857	0.84	-0.9
1,969,304	+		EFB2_01857	0.84	-1.2
1,969,304	+		EFB2_01857	0.84	+0.1
1,969,304	+		EFB2_01857	0.84	+0.9
1,969,304	+		EFB2_01857	0.84	+4.1
1,969,304	+		EFB2_01857	0.84	+0.5
1,969,304	+		EFB2_01857	0.84	-1.1
1,969,304	+		EFB2_01857	0.84	+0.5
1,969,304	+		EFB2_01857	0.84	+3.0
1,969,304	+		EFB2_01857	0.84	+0.2
1,969,304	+		EFB2_01857	0.84	-2.1
1,969,304	+		EFB2_01857	0.84	+0.0
1,969,396	+				-1.3
1,969,396	+				-0.2
1,969,396	+				-2.5
1,969,396	+				-0.6
1,969,396	+				-3.3
1,969,396	+				-0.9
1,969,397	-				-2.7
1,969,397	-				+0.8
1,969,397	-				+0.7
1,969,410	+				-3.2
1,969,410	+				-0.3
1,969,410	+				-0.2
1,969,410	+				+0.8
1,969,410	+				+0.0
1,969,410	+				-0.3
1,969,410	+				+0.7
1,969,411	-				+1.1
1,969,411	-				-0.9
1,969,411	-				-0.1
1,969,411	-				+0.3
1,969,411	-				+1.0
1,969,411	-				-1.5
1,969,411	-				+0.7
1,969,411	-				-1.2
1,969,411	-				-1.2
1,969,411	-				+0.7
1,969,411	-				+0.2
1,969,429	+				-1.7
1,969,430	-				-2.6
1,969,430	-				+0.6
1,969,430	-				-0.7
1,969,438	-				+0.5
1,969,438	-				+0.7
1,969,438	-				-1.5
1,969,466	+				+0.6
1,969,474	+				-0.4
1,969,474	+				-0.8
1,969,474	+				-0.1
1,969,477	+				-0.0
1,969,477	+				-0.1
1,969,477	+				+0.2
1,969,539	+				+0.8
1,969,539	+				-0.1
1,969,540	-				+0.2
1,969,540	-				+0.5
1,969,540	-				+0.2
1,969,576	+				+0.8
1,969,609	+				+1.6
1,969,609	+				-0.6
1,969,610	-				-0.2
1,969,610	-				+0.4
1,969,610	-				+0.4
1,969,610	-				-0.1
1,969,610	-				+0.7
1,969,623	-				+0.9
1,969,625	+				+0.7
1,969,625	+				-1.3
1,969,628	+				+1.7
1,969,628	+				-1.7
1,969,628	+				-2.6
1,969,628	+				-0.2
1,969,629	-				+0.1
1,969,629	-				-0.4
1,969,629	-				+0.2
1,969,629	-				-0.1
1,969,629	-				-0.7
1,969,652	+				-2.7
1,969,653	-				+0.9
1,969,653	-				+3.1
1,969,666	+				-1.4
1,969,666	+				-1.6
1,969,666	+				-0.0
1,969,667	-				+1.2
1,969,718	+		EFB2_01858	0.15	+0.5
1,969,718	+		EFB2_01858	0.15	+0.5
1,969,719	-		EFB2_01858	0.15	-0.1
1,969,719	-		EFB2_01858	0.15	-1.4
1,969,763	-		EFB2_01858	0.26	-0.9
1,969,788	+		EFB2_01858	0.32	+1.2
1,969,788	+		EFB2_01858	0.32	-1.1
1,969,788	+		EFB2_01858	0.32	-1.3
1,969,788	+		EFB2_01858	0.32	-2.2
1,969,788	+		EFB2_01858	0.32	-1.1
1,969,788	+		EFB2_01858	0.32	-0.9
1,969,789	-		EFB2_01858	0.32	+0.3
1,969,789	-		EFB2_01858	0.32	-1.1
1,969,789	-		EFB2_01858	0.32	-0.7
1,969,789	-		EFB2_01858	0.32	+1.1
1,969,789	-		EFB2_01858	0.32	-0.5
1,969,822	+		EFB2_01858	0.40	-2.2
1,969,822	+		EFB2_01858	0.40	-2.8
1,969,823	-		EFB2_01858	0.40	-1.8
1,969,823	-		EFB2_01858	0.40	-1.3
1,969,823	-		EFB2_01858	0.40	+0.4
1,969,823	-		EFB2_01858	0.40	+0.2
1,969,823	-		EFB2_01858	0.40	+0.3
1,969,823	-		EFB2_01858	0.40	+0.0
1,969,823	-		EFB2_01858	0.40	+1.5
1,969,826	+		EFB2_01858	0.41	-1.1
1,969,827	-		EFB2_01858	0.41	+1.7
1,969,839	+		EFB2_01858	0.44	+1.8
1,969,839	+		EFB2_01858	0.44	-2.4
1,969,839	+		EFB2_01858	0.44	-0.5
1,969,839	+		EFB2_01858	0.44	-1.3
1,969,839	+		EFB2_01858	0.44	-2.0
1,969,840	-		EFB2_01858	0.44	-1.7
1,969,840	-		EFB2_01858	0.44	+1.3
1,969,840	-		EFB2_01858	0.44	-0.1
1,969,840	-		EFB2_01858	0.44	+0.5
1,969,846	-		EFB2_01858	0.46	-1.0
1,969,846	-		EFB2_01858	0.46	-2.1
1,969,881	+		EFB2_01858	0.54	+2.8
1,969,881	+		EFB2_01858	0.54	-2.5
1,969,882	-		EFB2_01858	0.55	+1.1
1,969,882	-		EFB2_01858	0.55	-0.5
1,969,882	-		EFB2_01858	0.55	-0.3
1,969,882	-		EFB2_01858	0.55	+0.4
1,969,882	-		EFB2_01858	0.55	+1.4
1,969,888	+		EFB2_01858	0.56	+2.1
1,969,888	+		EFB2_01858	0.56	-0.6
1,969,888	+		EFB2_01858	0.56	+0.5
1,969,889	-		EFB2_01858	0.56	+0.6
1,969,889	-		EFB2_01858	0.56	-0.5
1,969,895	-		EFB2_01858	0.58	-1.5
1,969,895	-		EFB2_01858	0.58	-1.3
1,969,895	-		EFB2_01858	0.58	-0.6
1,969,895	-		EFB2_01858	0.58	-0.6
1,969,896	+		EFB2_01858	0.58	+0.1
1,969,896	+		EFB2_01858	0.58	-2.0
1,969,896	+		EFB2_01858	0.58	+0.2
1,969,896	+		EFB2_01858	0.58	+2.5
1,969,897	-		EFB2_01858	0.58	-0.8
1,969,897	-		EFB2_01858	0.58	-0.7
1,969,897	-		EFB2_01858	0.58	-1.0
1,969,897	-		EFB2_01858	0.58	+0.5
1,969,897	-		EFB2_01858	0.58	+0.4
1,969,897	-		EFB2_01858	0.58	-1.6
1,969,927	+		EFB2_01858	0.65	+0.9
1,969,928	-		EFB2_01858	0.66	-2.0
1,969,960	+		EFB2_01858	0.73	-0.1
1,969,960	+		EFB2_01858	0.73	+1.7
1,969,960	+		EFB2_01858	0.73	+1.5
1,969,960	+		EFB2_01858	0.73	-0.5
1,969,960	+		EFB2_01858	0.73	-0.1
1,969,961	-		EFB2_01858	0.74	-1.9
1,969,961	-		EFB2_01858	0.74	-0.9
1,969,961	-		EFB2_01858	0.74	+0.4
1,969,961	-		EFB2_01858	0.74	-1.6
1,969,961	-		EFB2_01858	0.74	+0.6
1,969,961	-		EFB2_01858	0.74	-1.1
1,969,961	-		EFB2_01858	0.74	+0.8
1,969,961	-		EFB2_01858	0.74	-2.9
1,969,961	-		EFB2_01858	0.74	-0.3
1,969,961	-		EFB2_01858	0.74	-0.6
1,969,963	+		EFB2_01858	0.74	-0.3
1,969,963	+		EFB2_01858	0.74	+0.5
1,969,963	+		EFB2_01858	0.74	-0.1
1,969,963	+		EFB2_01858	0.74	+0.5
1,969,963	+		EFB2_01858	0.74	-1.8
1,969,963	+		EFB2_01858	0.74	+0.9
1,969,964	-		EFB2_01858	0.74	-0.2
1,969,964	-		EFB2_01858	0.74	-0.2
1,969,964	-		EFB2_01858	0.74	-1.4
1,969,971	+		EFB2_01858	0.76	-0.8
1,969,971	+		EFB2_01858	0.76	-0.5
1,969,971	+		EFB2_01858	0.76	+0.5
1,969,971	+		EFB2_01858	0.76	-1.1
1,969,971	+		EFB2_01858	0.76	-0.7
1,969,972	-		EFB2_01858	0.76	-0.7
1,969,972	-		EFB2_01858	0.76	-0.4
1,969,972	-		EFB2_01858	0.76	+0.1
1,969,972	-		EFB2_01858	0.76	+1.3
1,969,972	-		EFB2_01858	0.76	-1.2
1,969,972	-		EFB2_01858	0.76	-0.4
1,969,972	-		EFB2_01858	0.76	-1.0
1,969,972	-		EFB2_01858	0.76	-0.2
1,969,972	-		EFB2_01858	0.76	-0.7
1,969,994	+		EFB2_01858	0.82	-0.2
1,969,994	+		EFB2_01858	0.82	-0.8
1,969,995	-		EFB2_01858	0.82	+1.7
1,969,995	-		EFB2_01858	0.82	+0.3
1,969,995	-		EFB2_01858	0.82	-0.9
1,969,995	-		EFB2_01858	0.82	+0.3
1,969,995	-		EFB2_01858	0.82	-2.2
1,969,995	-		EFB2_01858	0.82	-0.4
1,969,995	-		EFB2_01858	0.82	-0.3
1,970,029	+				-2.1
1,970,029	+				-2.7
1,970,029	+				-0.8
1,970,029	+				+0.1
1,970,029	+				+2.5
1,970,029	+				-1.5
1,970,029	+				+1.2
1,970,030	-				-2.2
1,970,030	-				+0.3
1,970,030	-				-2.0
1,970,030	-				+1.6
1,970,030	-				+1.3
1,970,030	-				+0.1
1,970,030	-				+0.0
1,970,034	-				-1.4
1,970,034	-				-0.9
1,970,034	-				+0.8
1,970,080	+				+0.1
1,970,080	+				+0.0
1,970,081	-				-0.1
1,970,081	-				-1.0
1,970,081	-				-0.8
1,970,085	+				-1.2
1,970,085	+				-0.5
1,970,086	-				+2.0
1,970,086	-				-0.8
1,970,086	-				+0.5
1,970,099	+				+1.0
1,970,099	+				+0.2
1,970,099	+				+1.1
1,970,100	-				-0.2
1,970,100	-				+2.2
1,970,100	-				+0.8
1,970,100	-				-0.7
1,970,100	-				+0.0
1,970,100	-				-0.7
1,970,103	+				+0.8
1,970,103	+				-2.2
1,970,103	+				+0.5
1,970,103	+				+2.5
1,970,104	-				+2.1
1,970,104	-				-0.9
1,970,104	-				-0.1
1,970,104	-				+0.1
1,970,104	-				+1.1
1,970,104	-				-0.8
1,970,160	+		EFB2_01859	0.12	-2.2
1,970,160	+		EFB2_01859	0.12	+0.5
1,970,160	+		EFB2_01859	0.12	+0.1
1,970,161	-		EFB2_01859	0.12	-0.1
1,970,161	-		EFB2_01859	0.12	+0.1
1,970,174	+		EFB2_01859	0.14	+0.1
1,970,175	-		EFB2_01859	0.14	+1.3
1,970,175	-		EFB2_01859	0.14	-3.2
1,970,175	-		EFB2_01859	0.14	-0.0
1,970,184	+		EFB2_01859	0.15	-2.5
1,970,184	+		EFB2_01859	0.15	-0.8
1,970,185	-		EFB2_01859	0.15	-0.3
1,970,185	-		EFB2_01859	0.15	-2.2
1,970,185	-		EFB2_01859	0.15	+0.5
1,970,219	-		EFB2_01859	0.21	+1.3
1,970,220	+		EFB2_01859	0.21	+2.0
1,970,220	+		EFB2_01859	0.21	-2.1
1,970,220	+		EFB2_01859	0.21	-1.9
1,970,220	+		EFB2_01859	0.21	-0.7
1,970,220	+		EFB2_01859	0.21	-1.1
1,970,220	+		EFB2_01859	0.21	-1.1
1,970,221	-		EFB2_01859	0.21	-1.3
1,970,221	-		EFB2_01859	0.21	-0.7
1,970,221	-		EFB2_01859	0.21	-0.7
1,970,221	-		EFB2_01859	0.21	+0.3
1,970,221	-		EFB2_01859	0.21	-0.6
1,970,221	-		EFB2_01859	0.21	-0.7
1,970,221	-		EFB2_01859	0.21	+0.9
1,970,221	-		EFB2_01859	0.21	-0.1
1,970,221	-		EFB2_01859	0.21	+1.2
1,970,221	-		EFB2_01859	0.21	-0.9
1,970,221	-		EFB2_01859	0.21	+1.2
1,970,221	-		EFB2_01859	0.21	+0.4
1,970,221	-		EFB2_01859	0.21	-0.9
1,970,221	-		EFB2_01859	0.21	-0.6
1,970,228	+		EFB2_01859	0.22	-0.6
1,970,228	+		EFB2_01859	0.22	-1.5
1,970,228	+		EFB2_01859	0.22	-2.6
1,970,228	+		EFB2_01859	0.22	-3.0
1,970,228	+		EFB2_01859	0.22	+1.3
1,970,234	-		EFB2_01859	0.23	+1.1
1,970,251	+		EFB2_01859	0.26	-0.8
1,970,251	+		EFB2_01859	0.26	-0.0
1,970,252	-		EFB2_01859	0.26	-0.9
1,970,252	-		EFB2_01859	0.26	-0.8
1,970,252	-		EFB2_01859	0.26	-0.3
1,970,252	-		EFB2_01859	0.26	-2.9
1,970,252	-		EFB2_01859	0.26	+1.2
1,970,252	-		EFB2_01859	0.26	+0.3
1,970,287	+		EFB2_01859	0.31	+1.4
1,970,288	-		EFB2_01859	0.31	-1.4
1,970,332	+		EFB2_01859	0.38	-3.0
1,970,332	+		EFB2_01859	0.38	-1.5
1,970,332	+		EFB2_01859	0.38	+0.7
1,970,332	+		EFB2_01859	0.38	+0.5
1,970,332	+		EFB2_01859	0.38	+1.8
1,970,332	+		EFB2_01859	0.38	+0.8
1,970,332	+		EFB2_01859	0.38	-2.7
1,970,332	+		EFB2_01859	0.38	+1.5
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1,971,526	-		EFB2_01861	0.29	+0.2
1,971,526	-		EFB2_01861	0.29	-0.6
1,971,526	-		EFB2_01861	0.29	+0.2
1,971,526	-		EFB2_01861	0.29	-0.5
1,971,526	-		EFB2_01861	0.29	-2.2
1,971,526	-		EFB2_01861	0.29	-1.4
1,971,526	-		EFB2_01861	0.29	-1.7
1,971,526	-		EFB2_01861	0.29	-0.4
1,971,526	-		EFB2_01861	0.29	-0.5
1,971,526	-		EFB2_01861	0.29	+1.0
1,971,526	-		EFB2_01861	0.29	-0.1
1,971,526	-		EFB2_01861	0.29	-0.2
1,971,528	-		EFB2_01861	0.29	-1.7
1,971,528	-		EFB2_01861	0.29	-1.6
1,971,528	-		EFB2_01861	0.29	-0.8
1,971,528	-		EFB2_01861	0.29	+0.3
1,971,528	-		EFB2_01861	0.29	-1.6
1,971,552	+		EFB2_01861	0.33	-0.6
1,971,552	+		EFB2_01861	0.33	-0.1
1,971,712	-		EFB2_01861	0.56	+0.9
1,971,714	-		EFB2_01861	0.57	-1.9
1,971,714	-		EFB2_01861	0.57	-0.1
1,971,714	-		EFB2_01861	0.57	-1.1
1,971,714	-		EFB2_01861	0.57	+0.2
1,971,714	-		EFB2_01861	0.57	-0.9
1,971,714	-		EFB2_01861	0.57	-2.1
1,971,727	-		EFB2_01861	0.59	+0.2
1,971,727	-		EFB2_01861	0.59	-2.3