Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05150 and BACOVA_05151 are separated by 67 nucleotides BACOVA_05151 and BACOVA_05152 are separated by 34 nucleotides BACOVA_05152 and BACOVA_05153 are separated by 116 nucleotides
BACOVA_05150: BACOVA_05150 - sigma factor regulatory protein, FecR/PupR family, at 631,080 to 632,240
_05150
BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862
_05151
BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598
_05152
BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904
_05153
Position (kb) 632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 631.916 kb on - strand, within BACOVA_05150 at 631.916 kb on - strand, within BACOVA_05150 at 631.916 kb on - strand, within BACOVA_05150 at 631.925 kb on - strand, within BACOVA_05150 at 631.936 kb on - strand, within BACOVA_05150 at 631.941 kb on + strand, within BACOVA_05150 at 631.948 kb on - strand, within BACOVA_05150 at 631.948 kb on - strand, within BACOVA_05150 at 631.964 kb on - strand, within BACOVA_05150 at 631.964 kb on - strand, within BACOVA_05150 at 632.024 kb on - strand, within BACOVA_05150 at 632.065 kb on - strand, within BACOVA_05150 at 632.084 kb on - strand, within BACOVA_05150 at 632.097 kb on + strand, within BACOVA_05150 at 632.113 kb on - strand, within BACOVA_05150 at 632.152 kb on + strand at 632.317 kb on + strand at 632.459 kb on + strand, within BACOVA_05151 at 632.460 kb on - strand, within BACOVA_05151 at 632.462 kb on - strand, within BACOVA_05151 at 632.557 kb on - strand, within BACOVA_05151 at 632.583 kb on - strand, within BACOVA_05151 at 632.608 kb on + strand, within BACOVA_05151 at 632.643 kb on - strand, within BACOVA_05151 at 632.707 kb on + strand, within BACOVA_05151 at 632.750 kb on + strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.781 kb on - strand, within BACOVA_05151 at 632.783 kb on + strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.794 kb on + strand, within BACOVA_05151 at 632.795 kb on - strand, within BACOVA_05151 at 632.828 kb on - strand at 632.840 kb on - strand at 632.850 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.867 kb on + strand at 632.898 kb on + strand at 633.226 kb on + strand, within BACOVA_05152 at 633.260 kb on - strand, within BACOVA_05152 at 633.483 kb on + strand, within BACOVA_05152 at 633.492 kb on - strand, within BACOVA_05152 at 633.542 kb on + strand at 633.619 kb on - strand at 633.667 kb on - strand at 633.738 kb on + strand at 633.878 kb on - strand at 633.911 kb on - strand at 634.119 kb on - strand, within BACOVA_05153 at 634.183 kb on - strand, within BACOVA_05153 at 634.209 kb on + strand, within BACOVA_05153 at 634.210 kb on - strand, within BACOVA_05153 at 634.394 kb on - strand, within BACOVA_05153
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 631,916 - BACOVA_05150 0.72 +0.3 631,916 - BACOVA_05150 0.72 +1.7 631,916 - BACOVA_05150 0.72 -0.2 631,925 - BACOVA_05150 0.73 -0.3 631,936 - BACOVA_05150 0.74 -0.5 631,941 + BACOVA_05150 0.74 -0.4 631,948 - BACOVA_05150 0.75 -0.4 631,948 - BACOVA_05150 0.75 -0.7 631,964 - BACOVA_05150 0.76 -0.0 631,964 - BACOVA_05150 0.76 +0.8 632,024 - BACOVA_05150 0.81 +0.2 632,065 - BACOVA_05150 0.85 +3.2 632,084 - BACOVA_05150 0.86 +1.1 632,097 + BACOVA_05150 0.88 +0.3 632,113 - BACOVA_05150 0.89 +1.0 632,152 + +0.2 632,317 + -0.6 632,459 + BACOVA_05151 0.27 -0.1 632,460 - BACOVA_05151 0.27 -1.5 632,462 - BACOVA_05151 0.28 -0.9 632,557 - BACOVA_05151 0.45 -0.8 632,583 - BACOVA_05151 0.50 +1.5 632,608 + BACOVA_05151 0.54 +0.9 632,643 - BACOVA_05151 0.60 +1.3 632,707 + BACOVA_05151 0.72 -0.0 632,750 + BACOVA_05151 0.80 -0.1 632,776 - BACOVA_05151 0.84 -1.1 632,776 - BACOVA_05151 0.84 +0.4 632,780 + BACOVA_05151 0.85 +1.5 632,780 + BACOVA_05151 0.85 +1.1 632,781 - BACOVA_05151 0.85 -2.0 632,783 + BACOVA_05151 0.86 +1.0 632,784 - BACOVA_05151 0.86 -0.4 632,784 - BACOVA_05151 0.86 -1.5 632,794 + BACOVA_05151 0.88 +1.5 632,795 - BACOVA_05151 0.88 +0.1 632,828 - -0.2 632,840 - -0.2 632,850 + -0.8 632,854 + +0.1 632,854 + +0.7 632,854 + -1.0 632,855 - +1.0 632,855 - +0.9 632,855 - +0.4 632,855 - +0.2 632,855 - -0.4 632,867 + +1.1 632,898 + -1.1 633,226 + BACOVA_05152 0.47 -0.9 633,260 - BACOVA_05152 0.52 +0.3 633,483 + BACOVA_05152 0.83 -0.3 633,492 - BACOVA_05152 0.85 -1.3 633,542 + -1.0 633,619 - -2.9 633,667 - -2.4 633,738 + -0.9 633,878 - -1.2 633,911 - -1.6 634,119 - BACOVA_05153 0.18 -0.3 634,183 - BACOVA_05153 0.21 -1.0 634,209 + BACOVA_05153 0.23 -1.9 634,210 - BACOVA_05153 0.23 -1.6 634,394 - BACOVA_05153 0.31 -1.9
Or see this region's nucleotide sequence