Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05100 and BACOVA_05101 are separated by 137 nucleotides BACOVA_05101 and BACOVA_05102 are separated by 128 nucleotides BACOVA_05102 and BACOVA_05103 are separated by 165 nucleotides
BACOVA_05100: BACOVA_05100 - cyclic nucleotide-binding domain protein, at 572,386 to 573,054
_05100
BACOVA_05101: BACOVA_05101 - putative membrane protein, MarC family, at 573,192 to 573,791
_05101
BACOVA_05102: BACOVA_05102 - peptidase, S54 family, at 573,920 to 574,621
_05102
BACOVA_05103: BACOVA_05103 - putative glycogen debranching enzyme, archaeal type, at 574,787 to 576,724
_05103
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.946 kb on + strand, within BACOVA_05100 at 572.983 kb on - strand, within BACOVA_05100 at 573.054 kb on + strand at 573.061 kb on + strand at 573.062 kb on - strand at 573.062 kb on - strand at 573.100 kb on + strand at 573.159 kb on + strand at 573.166 kb on + strand at 573.191 kb on + strand at 573.192 kb on - strand at 573.224 kb on + strand at 573.225 kb on - strand at 573.225 kb on - strand at 573.225 kb on - strand at 573.233 kb on + strand at 573.253 kb on + strand, within BACOVA_05101 at 573.257 kb on + strand, within BACOVA_05101 at 573.258 kb on - strand, within BACOVA_05101 at 573.271 kb on + strand, within BACOVA_05101 at 573.272 kb on - strand, within BACOVA_05101 at 573.275 kb on + strand, within BACOVA_05101 at 573.275 kb on + strand, within BACOVA_05101 at 573.276 kb on - strand, within BACOVA_05101 at 573.276 kb on - strand, within BACOVA_05101 at 573.279 kb on - strand, within BACOVA_05101 at 573.279 kb on - strand, within BACOVA_05101 at 573.280 kb on + strand, within BACOVA_05101 at 573.280 kb on + strand, within BACOVA_05101 at 573.327 kb on - strand, within BACOVA_05101 at 573.327 kb on - strand, within BACOVA_05101 at 573.374 kb on + strand, within BACOVA_05101 at 573.375 kb on - strand, within BACOVA_05101 at 573.397 kb on + strand, within BACOVA_05101 at 573.443 kb on + strand, within BACOVA_05101 at 573.495 kb on - strand, within BACOVA_05101 at 573.582 kb on + strand, within BACOVA_05101 at 573.596 kb on + strand, within BACOVA_05101 at 573.596 kb on + strand, within BACOVA_05101 at 573.597 kb on - strand, within BACOVA_05101 at 573.597 kb on - strand, within BACOVA_05101 at 573.602 kb on + strand, within BACOVA_05101 at 573.603 kb on - strand, within BACOVA_05101 at 573.604 kb on + strand, within BACOVA_05101 at 573.604 kb on + strand, within BACOVA_05101 at 573.605 kb on - strand, within BACOVA_05101 at 573.610 kb on + strand, within BACOVA_05101 at 573.633 kb on + strand, within BACOVA_05101 at 573.641 kb on - strand, within BACOVA_05101 at 573.693 kb on - strand, within BACOVA_05101 at 573.713 kb on + strand, within BACOVA_05101 at 573.725 kb on - strand, within BACOVA_05101 at 573.755 kb on + strand at 573.757 kb on + strand at 573.758 kb on - strand at 573.758 kb on - strand at 573.801 kb on + strand at 573.802 kb on - strand at 573.813 kb on + strand at 573.813 kb on + strand at 573.813 kb on + strand at 573.818 kb on + strand at 573.923 kb on + strand at 573.964 kb on + strand at 574.051 kb on + strand, within BACOVA_05102 at 574.102 kb on - strand, within BACOVA_05102 at 574.111 kb on + strand, within BACOVA_05102 at 574.112 kb on - strand, within BACOVA_05102 at 574.112 kb on - strand, within BACOVA_05102 at 574.118 kb on + strand, within BACOVA_05102 at 574.118 kb on + strand, within BACOVA_05102 at 574.119 kb on - strand, within BACOVA_05102 at 574.120 kb on + strand, within BACOVA_05102 at 574.134 kb on - strand, within BACOVA_05102 at 574.134 kb on - strand, within BACOVA_05102 at 574.174 kb on - strand, within BACOVA_05102 at 574.210 kb on + strand, within BACOVA_05102 at 574.223 kb on + strand, within BACOVA_05102 at 574.270 kb on + strand, within BACOVA_05102 at 574.275 kb on - strand, within BACOVA_05102 at 574.275 kb on - strand, within BACOVA_05102 at 574.275 kb on - strand, within BACOVA_05102 at 574.296 kb on - strand, within BACOVA_05102 at 574.310 kb on - strand, within BACOVA_05102 at 574.387 kb on + strand, within BACOVA_05102 at 574.400 kb on + strand, within BACOVA_05102 at 574.415 kb on + strand, within BACOVA_05102 at 574.416 kb on - strand, within BACOVA_05102 at 574.421 kb on - strand, within BACOVA_05102 at 574.425 kb on - strand, within BACOVA_05102 at 574.449 kb on + strand, within BACOVA_05102 at 574.503 kb on - strand, within BACOVA_05102 at 574.505 kb on - strand, within BACOVA_05102 at 574.561 kb on + strand at 574.588 kb on + strand at 574.598 kb on - strand at 574.699 kb on - strand at 574.735 kb on - strand at 574.738 kb on + strand at 574.743 kb on - strand at 574.773 kb on - strand at 574.787 kb on - strand at 574.794 kb on - strand at 574.885 kb on + strand at 574.932 kb on + strand at 574.996 kb on - strand, within BACOVA_05103 at 575.017 kb on + strand, within BACOVA_05103 at 575.072 kb on + strand, within BACOVA_05103 at 575.072 kb on + strand, within BACOVA_05103 at 575.072 kb on + strand, within BACOVA_05103 at 575.074 kb on + strand, within BACOVA_05103 at 575.157 kb on + strand, within BACOVA_05103 at 575.158 kb on - strand, within BACOVA_05103 at 575.186 kb on + strand, within BACOVA_05103 at 575.253 kb on + strand, within BACOVA_05103 at 575.327 kb on - strand, within BACOVA_05103 at 575.330 kb on + strand, within BACOVA_05103 at 575.331 kb on - strand, within BACOVA_05103 at 575.331 kb on - strand, within BACOVA_05103 at 575.350 kb on - strand, within BACOVA_05103 at 575.350 kb on - strand, within BACOVA_05103 at 575.350 kb on - strand, within BACOVA_05103 at 575.353 kb on + strand, within BACOVA_05103 at 575.353 kb on + strand, within BACOVA_05103 at 575.486 kb on - strand, within BACOVA_05103
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 572,946 + BACOVA_05100 0.84 -0.3 572,983 - BACOVA_05100 0.89 -0.2 573,054 + +1.0 573,061 + -1.0 573,062 - -0.3 573,062 - -0.8 573,100 + -1.4 573,159 + -2.5 573,166 + -0.5 573,191 + -1.0 573,192 - -0.2 573,224 + -1.9 573,225 - -3.2 573,225 - -1.2 573,225 - +2.3 573,233 + -1.5 573,253 + BACOVA_05101 0.10 +0.3 573,257 + BACOVA_05101 0.11 -2.7 573,258 - BACOVA_05101 0.11 -2.7 573,271 + BACOVA_05101 0.13 -0.7 573,272 - BACOVA_05101 0.13 -1.1 573,275 + BACOVA_05101 0.14 -2.9 573,275 + BACOVA_05101 0.14 -1.2 573,276 - BACOVA_05101 0.14 -2.0 573,276 - BACOVA_05101 0.14 -2.6 573,279 - BACOVA_05101 0.14 -1.0 573,279 - BACOVA_05101 0.14 -1.3 573,280 + BACOVA_05101 0.15 -2.6 573,280 + BACOVA_05101 0.15 -1.4 573,327 - BACOVA_05101 0.23 -1.7 573,327 - BACOVA_05101 0.23 -2.1 573,374 + BACOVA_05101 0.30 -1.2 573,375 - BACOVA_05101 0.30 -0.5 573,397 + BACOVA_05101 0.34 +0.5 573,443 + BACOVA_05101 0.42 -3.1 573,495 - BACOVA_05101 0.51 -2.3 573,582 + BACOVA_05101 0.65 -1.0 573,596 + BACOVA_05101 0.67 -2.9 573,596 + BACOVA_05101 0.67 +0.5 573,597 - BACOVA_05101 0.68 -1.5 573,597 - BACOVA_05101 0.68 -2.2 573,602 + BACOVA_05101 0.68 -2.5 573,603 - BACOVA_05101 0.69 -0.5 573,604 + BACOVA_05101 0.69 -1.9 573,604 + BACOVA_05101 0.69 +1.5 573,605 - BACOVA_05101 0.69 -0.5 573,610 + BACOVA_05101 0.70 -1.7 573,633 + BACOVA_05101 0.73 +0.1 573,641 - BACOVA_05101 0.75 -1.9 573,693 - BACOVA_05101 0.83 -1.3 573,713 + BACOVA_05101 0.87 -2.3 573,725 - BACOVA_05101 0.89 -0.2 573,755 + -0.9 573,757 + -0.9 573,758 - -0.2 573,758 - -1.5 573,801 + +0.2 573,802 - -1.1 573,813 + -0.5 573,813 + +1.4 573,813 + -1.6 573,818 + +0.5 573,923 + +1.0 573,964 + +1.6 574,051 + BACOVA_05102 0.19 -0.4 574,102 - BACOVA_05102 0.26 +0.4 574,111 + BACOVA_05102 0.27 -1.2 574,112 - BACOVA_05102 0.27 +0.2 574,112 - BACOVA_05102 0.27 -0.0 574,118 + BACOVA_05102 0.28 +0.1 574,118 + BACOVA_05102 0.28 -1.9 574,119 - BACOVA_05102 0.28 -0.7 574,120 + BACOVA_05102 0.28 -0.0 574,134 - BACOVA_05102 0.30 -1.0 574,134 - BACOVA_05102 0.30 -0.8 574,174 - BACOVA_05102 0.36 +0.6 574,210 + BACOVA_05102 0.41 -1.1 574,223 + BACOVA_05102 0.43 +1.9 574,270 + BACOVA_05102 0.50 -0.2 574,275 - BACOVA_05102 0.51 -2.2 574,275 - BACOVA_05102 0.51 +1.6 574,275 - BACOVA_05102 0.51 -0.5 574,296 - BACOVA_05102 0.54 -1.4 574,310 - BACOVA_05102 0.56 -0.0 574,387 + BACOVA_05102 0.67 -1.3 574,400 + BACOVA_05102 0.68 -0.3 574,415 + BACOVA_05102 0.71 +0.7 574,416 - BACOVA_05102 0.71 +0.5 574,421 - BACOVA_05102 0.71 -1.0 574,425 - BACOVA_05102 0.72 -0.0 574,449 + BACOVA_05102 0.75 -1.2 574,503 - BACOVA_05102 0.83 -0.1 574,505 - BACOVA_05102 0.83 -1.7 574,561 + -0.3 574,588 + +0.5 574,598 - +0.6 574,699 - +0.7 574,735 - +0.8 574,738 + -1.4 574,743 - +1.0 574,773 - -0.3 574,787 - +0.2 574,794 - +1.5 574,885 + +0.2 574,932 + +0.3 574,996 - BACOVA_05103 0.11 +1.6 575,017 + BACOVA_05103 0.12 +0.3 575,072 + BACOVA_05103 0.15 -0.2 575,072 + BACOVA_05103 0.15 +1.2 575,072 + BACOVA_05103 0.15 -0.8 575,074 + BACOVA_05103 0.15 +0.3 575,157 + BACOVA_05103 0.19 -1.2 575,158 - BACOVA_05103 0.19 +0.5 575,186 + BACOVA_05103 0.21 -0.2 575,253 + BACOVA_05103 0.24 -0.4 575,327 - BACOVA_05103 0.28 -1.1 575,330 + BACOVA_05103 0.28 -1.4 575,331 - BACOVA_05103 0.28 -0.8 575,331 - BACOVA_05103 0.28 -0.4 575,350 - BACOVA_05103 0.29 +0.6 575,350 - BACOVA_05103 0.29 +0.7 575,350 - BACOVA_05103 0.29 +0.5 575,353 + BACOVA_05103 0.29 +0.2 575,353 + BACOVA_05103 0.29 +0.5 575,486 - BACOVA_05103 0.36 +1.0
Or see this region's nucleotide sequence