Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04063

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04062 and BACOVA_04063 are separated by 152 nucleotidesBACOVA_04063 and BACOVA_04064 are separated by 73 nucleotides BACOVA_04062: BACOVA_04062 - aminotransferase, class I/II, at 393,782 to 395,098 _04062 BACOVA_04063: BACOVA_04063 - tRNA-Asp, at 395,251 to 395,324 _04063 BACOVA_04064: BACOVA_04064 - beta-ketoacyl-acyl-carrier-protein synthase III, at 395,398 to 396,402 _04064 Position (kb) 395 396Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 394.268 kb on + strand, within BACOVA_04062at 394.298 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.344 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.348 kb on - strand, within BACOVA_04062at 394.358 kb on - strand, within BACOVA_04062at 394.403 kb on + strand, within BACOVA_04062at 394.404 kb on - strand, within BACOVA_04062at 394.554 kb on - strand, within BACOVA_04062at 394.556 kb on - strand, within BACOVA_04062at 394.572 kb on + strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.748 kb on - strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.790 kb on + strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.817 kb on - strand, within BACOVA_04062at 394.867 kb on - strand, within BACOVA_04062at 394.868 kb on + strand, within BACOVA_04062at 394.961 kb on - strand, within BACOVA_04062at 395.020 kb on + strandat 395.114 kb on - strandat 395.116 kb on + strandat 395.139 kb on - strandat 395.146 kb on - strandat 395.259 kb on - strand, within BACOVA_04063at 395.272 kb on - strand, within BACOVA_04063at 395.399 kb on + strandat 395.417 kb on + strandat 395.433 kb on - strandat 395.470 kb on - strandat 395.541 kb on + strand, within BACOVA_04064at 395.541 kb on + strand, within BACOVA_04064at 395.688 kb on + strand, within BACOVA_04064at 395.723 kb on + strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.724 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.737 kb on - strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.754 kb on + strand, within BACOVA_04064at 395.756 kb on + strand, within BACOVA_04064at 395.770 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.779 kb on - strand, within BACOVA_04064at 395.793 kb on + strand, within BACOVA_04064at 395.794 kb on - strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.797 kb on + strand, within BACOVA_04064at 395.814 kb on + strand, within BACOVA_04064at 395.865 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.883 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.980 kb on + strand, within BACOVA_04064at 395.986 kb on + strand, within BACOVA_04064at 396.042 kb on - strand, within BACOVA_04064at 396.110 kb on - strand, within BACOVA_04064at 396.110 kb on - strand, within BACOVA_04064at 396.153 kb on + strand, within BACOVA_04064at 396.157 kb on + strand, within BACOVA_04064at 396.157 kb on + strand, within BACOVA_04064at 396.175 kb on - strand, within BACOVA_04064at 396.206 kb on - strand, within BACOVA_04064at 396.229 kb on + strand, within BACOVA_04064at 396.233 kb on + strand, within BACOVA_04064at 396.234 kb on - strand, within BACOVA_04064at 396.234 kb on - strand, within BACOVA_04064at 396.264 kb on + strand, within BACOVA_04064

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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394,268 + BACOVA_04062 0.37 -0.9
394,298 - BACOVA_04062 0.39 +1.0
394,344 - BACOVA_04062 0.43 -3.0
394,344 - BACOVA_04062 0.43 -2.4
394,348 - BACOVA_04062 0.43 -0.0
394,348 - BACOVA_04062 0.43 +1.5
394,358 - BACOVA_04062 0.44 +0.1
394,403 + BACOVA_04062 0.47 -1.0
394,404 - BACOVA_04062 0.47 +0.1
394,554 - BACOVA_04062 0.59 -0.4
394,556 - BACOVA_04062 0.59 -0.3
394,572 + BACOVA_04062 0.60 +0.4
394,748 - BACOVA_04062 0.73 +0.0
394,748 - BACOVA_04062 0.73 -1.3
394,790 + BACOVA_04062 0.77 -0.1
394,790 + BACOVA_04062 0.77 -2.0
394,817 - BACOVA_04062 0.79 -1.0
394,817 - BACOVA_04062 0.79 -1.2
394,867 - BACOVA_04062 0.82 -0.2
394,868 + BACOVA_04062 0.82 -1.0
394,961 - BACOVA_04062 0.90 -1.5
395,020 + -0.9
395,114 - -2.2
395,116 + -1.7
395,139 - -0.7
395,146 - +0.5
395,259 - BACOVA_04063 0.11 -0.7
395,272 - BACOVA_04063 0.28 +0.1
395,399 + -1.3
395,417 + -0.5
395,433 - -0.5
395,470 - -0.5
395,541 + BACOVA_04064 0.14 +0.4
395,541 + BACOVA_04064 0.14 +1.1
395,688 + BACOVA_04064 0.29 +1.1
395,723 + BACOVA_04064 0.32 -1.9
395,724 - BACOVA_04064 0.32 +0.4
395,724 - BACOVA_04064 0.32 -0.5
395,737 - BACOVA_04064 0.34 -0.1
395,737 - BACOVA_04064 0.34 -0.3
395,754 + BACOVA_04064 0.35 -0.2
395,754 + BACOVA_04064 0.35 +3.1
395,754 + BACOVA_04064 0.35 -0.1
395,756 + BACOVA_04064 0.36 +1.6
395,770 - BACOVA_04064 0.37 +2.5
395,779 - BACOVA_04064 0.38 -1.0
395,779 - BACOVA_04064 0.38 +0.5
395,779 - BACOVA_04064 0.38 +1.4
395,793 + BACOVA_04064 0.39 +0.2
395,794 - BACOVA_04064 0.39 -0.5
395,797 + BACOVA_04064 0.40 -0.3
395,797 + BACOVA_04064 0.40 -0.3
395,814 + BACOVA_04064 0.41 +0.1
395,865 + BACOVA_04064 0.46 -0.6
395,883 + BACOVA_04064 0.48 -0.4
395,883 + BACOVA_04064 0.48 -0.2
395,980 + BACOVA_04064 0.58 -1.0
395,980 + BACOVA_04064 0.58 -0.7
395,986 + BACOVA_04064 0.59 -1.0
396,042 - BACOVA_04064 0.64 +0.3
396,110 - BACOVA_04064 0.71 +1.5
396,110 - BACOVA_04064 0.71 +0.4
396,153 + BACOVA_04064 0.75 -0.2
396,157 + BACOVA_04064 0.76 -0.2
396,157 + BACOVA_04064 0.76 +2.1
396,175 - BACOVA_04064 0.77 +0.1
396,206 - BACOVA_04064 0.80 -0.7
396,229 + BACOVA_04064 0.83 -0.9
396,233 + BACOVA_04064 0.83 -0.2
396,234 - BACOVA_04064 0.83 -0.0
396,234 - BACOVA_04064 0.83 -0.2
396,264 + BACOVA_04064 0.86 -0.0

Or see this region's nucleotide sequence