Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03850 and BACOVA_03851 are separated by 129 nucleotides BACOVA_03851 and BACOVA_03852 are separated by 17 nucleotides BACOVA_03852 and BACOVA_03853 are separated by 6 nucleotides BACOVA_03853 and BACOVA_03854 are separated by 19 nucleotides
BACOVA_03850: BACOVA_03850 - arabinose isomerase, at 199,978 to 201,753
_03850
BACOVA_03851: BACOVA_03851 - class II Aldolase and Adducin domain protein, at 201,883 to 202,521
_03851
BACOVA_03852: BACOVA_03852 - carbohydrate kinase, FGGY family protein, at 202,539 to 203,969
_03852
BACOVA_03853: BACOVA_03853 - hypothetical protein, at 203,976 to 204,368
_03853
BACOVA_03854: BACOVA_03854 - L-fucose:H+ symporter permease, at 204,388 to 205,698
_03854
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.539 kb on + strand, within BACOVA_03850 at 201.546 kb on + strand, within BACOVA_03850 at 201.571 kb on - strand, within BACOVA_03850 at 201.577 kb on + strand at 201.599 kb on + strand at 201.599 kb on + strand at 201.632 kb on + strand at 201.633 kb on - strand at 201.636 kb on + strand at 201.637 kb on - strand at 201.637 kb on - strand at 201.637 kb on - strand at 201.637 kb on - strand at 201.637 kb on - strand at 201.637 kb on - strand at 201.647 kb on + strand at 201.647 kb on + strand at 201.647 kb on + strand at 201.733 kb on + strand at 201.733 kb on + strand at 201.734 kb on - strand at 201.742 kb on - strand at 201.742 kb on - strand at 201.748 kb on - strand at 201.752 kb on - strand at 201.776 kb on - strand at 201.776 kb on - strand at 201.869 kb on - strand at 201.872 kb on + strand at 201.873 kb on - strand at 201.901 kb on - strand at 202.088 kb on + strand, within BACOVA_03851 at 202.107 kb on + strand, within BACOVA_03851 at 202.108 kb on - strand, within BACOVA_03851 at 202.108 kb on - strand, within BACOVA_03851 at 202.122 kb on + strand, within BACOVA_03851 at 202.122 kb on + strand, within BACOVA_03851 at 202.174 kb on + strand, within BACOVA_03851 at 202.247 kb on + strand, within BACOVA_03851 at 202.248 kb on - strand, within BACOVA_03851 at 202.260 kb on - strand, within BACOVA_03851 at 202.276 kb on + strand, within BACOVA_03851 at 202.313 kb on + strand, within BACOVA_03851 at 202.314 kb on - strand, within BACOVA_03851 at 202.332 kb on + strand, within BACOVA_03851 at 202.391 kb on + strand, within BACOVA_03851 at 202.392 kb on - strand, within BACOVA_03851 at 202.453 kb on + strand, within BACOVA_03851 at 202.495 kb on + strand at 202.499 kb on + strand at 202.499 kb on + strand at 202.500 kb on - strand at 202.519 kb on + strand at 202.522 kb on + strand at 202.532 kb on + strand at 202.645 kb on + strand at 202.648 kb on - strand at 202.676 kb on - strand at 202.686 kb on - strand, within BACOVA_03852 at 202.733 kb on - strand, within BACOVA_03852 at 202.826 kb on - strand, within BACOVA_03852 at 202.883 kb on - strand, within BACOVA_03852 at 202.941 kb on - strand, within BACOVA_03852 at 202.946 kb on + strand, within BACOVA_03852 at 202.947 kb on - strand, within BACOVA_03852 at 203.037 kb on + strand, within BACOVA_03852 at 203.126 kb on + strand, within BACOVA_03852 at 203.131 kb on + strand, within BACOVA_03852 at 203.132 kb on - strand, within BACOVA_03852 at 203.135 kb on + strand, within BACOVA_03852 at 203.135 kb on + strand, within BACOVA_03852 at 203.135 kb on + strand, within BACOVA_03852 at 203.136 kb on - strand, within BACOVA_03852 at 203.136 kb on - strand, within BACOVA_03852 at 203.136 kb on - strand, within BACOVA_03852 at 203.140 kb on + strand, within BACOVA_03852 at 203.255 kb on - strand, within BACOVA_03852 at 203.267 kb on + strand, within BACOVA_03852 at 203.268 kb on - strand, within BACOVA_03852 at 203.371 kb on + strand, within BACOVA_03852 at 203.447 kb on - strand, within BACOVA_03852 at 203.516 kb on + strand, within BACOVA_03852 at 203.516 kb on + strand, within BACOVA_03852 at 203.517 kb on - strand, within BACOVA_03852 at 203.518 kb on + strand, within BACOVA_03852 at 203.553 kb on - strand, within BACOVA_03852 at 203.566 kb on + strand, within BACOVA_03852 at 203.690 kb on - strand, within BACOVA_03852 at 203.756 kb on - strand, within BACOVA_03852 at 203.950 kb on + strand at 203.950 kb on + strand at 203.952 kb on + strand at 203.955 kb on + strand at 204.012 kb on + strand at 204.053 kb on - strand, within BACOVA_03853 at 204.096 kb on - strand, within BACOVA_03853 at 204.188 kb on + strand, within BACOVA_03853 at 204.189 kb on - strand, within BACOVA_03853 at 204.189 kb on - strand, within BACOVA_03853 at 204.276 kb on + strand, within BACOVA_03853 at 204.276 kb on + strand, within BACOVA_03853 at 204.285 kb on - strand, within BACOVA_03853 at 204.358 kb on - strand at 204.359 kb on + strand at 204.439 kb on - strand at 204.439 kb on - strand at 204.440 kb on + strand at 204.441 kb on - strand at 204.448 kb on - strand at 204.456 kb on + strand at 204.456 kb on + strand at 204.457 kb on - strand at 204.510 kb on - strand at 204.574 kb on + strand, within BACOVA_03854 at 204.664 kb on + strand, within BACOVA_03854 at 204.664 kb on + strand, within BACOVA_03854 at 204.665 kb on - strand, within BACOVA_03854 at 204.665 kb on - strand, within BACOVA_03854 at 204.713 kb on - strand, within BACOVA_03854 at 204.713 kb on - strand, within BACOVA_03854 at 204.733 kb on + strand, within BACOVA_03854 at 204.785 kb on - strand, within BACOVA_03854 at 204.787 kb on - strand, within BACOVA_03854 at 204.787 kb on - strand, within BACOVA_03854 at 204.874 kb on + strand, within BACOVA_03854 at 204.874 kb on + strand, within BACOVA_03854 at 204.874 kb on + strand, within BACOVA_03854 at 204.875 kb on - strand, within BACOVA_03854 at 204.875 kb on - strand, within BACOVA_03854 at 204.878 kb on + strand, within BACOVA_03854 at 204.879 kb on - strand, within BACOVA_03854 at 204.879 kb on - strand, within BACOVA_03854
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 201,539 + BACOVA_03850 0.88 -0.0 201,546 + BACOVA_03850 0.88 -1.5 201,571 - BACOVA_03850 0.90 +0.4 201,577 + +0.9 201,599 + -2.1 201,599 + -0.9 201,632 + -1.7 201,633 - +1.0 201,636 + +0.9 201,637 - +1.1 201,637 - -0.3 201,637 - -1.2 201,637 - +0.5 201,637 - +0.2 201,637 - +0.9 201,647 + -1.2 201,647 + -1.0 201,647 + +0.8 201,733 + -1.0 201,733 + +0.6 201,734 - -0.4 201,742 - -1.6 201,742 - -0.3 201,748 - -0.9 201,752 - +0.7 201,776 - +1.3 201,776 - -0.2 201,869 - +0.3 201,872 + +0.1 201,873 - +1.1 201,901 - -0.7 202,088 + BACOVA_03851 0.32 +1.1 202,107 + BACOVA_03851 0.35 -0.3 202,108 - BACOVA_03851 0.35 +0.6 202,108 - BACOVA_03851 0.35 -0.1 202,122 + BACOVA_03851 0.37 +0.7 202,122 + BACOVA_03851 0.37 +1.4 202,174 + BACOVA_03851 0.46 -1.1 202,247 + BACOVA_03851 0.57 -1.6 202,248 - BACOVA_03851 0.57 -0.6 202,260 - BACOVA_03851 0.59 -0.5 202,276 + BACOVA_03851 0.62 -0.0 202,313 + BACOVA_03851 0.67 -0.0 202,314 - BACOVA_03851 0.67 -0.2 202,332 + BACOVA_03851 0.70 -0.9 202,391 + BACOVA_03851 0.79 +0.3 202,392 - BACOVA_03851 0.80 -0.9 202,453 + BACOVA_03851 0.89 -0.0 202,495 + -0.7 202,499 + +0.3 202,499 + +0.0 202,500 - +0.3 202,519 + -0.3 202,522 + -2.3 202,532 + -0.8 202,645 + -0.5 202,648 - +0.9 202,676 - +0.4 202,686 - BACOVA_03852 0.10 +0.7 202,733 - BACOVA_03852 0.14 -1.9 202,826 - BACOVA_03852 0.20 -0.8 202,883 - BACOVA_03852 0.24 -0.4 202,941 - BACOVA_03852 0.28 -0.3 202,946 + BACOVA_03852 0.28 -0.7 202,947 - BACOVA_03852 0.29 +1.7 203,037 + BACOVA_03852 0.35 +0.5 203,126 + BACOVA_03852 0.41 +0.5 203,131 + BACOVA_03852 0.41 -1.1 203,132 - BACOVA_03852 0.41 -0.6 203,135 + BACOVA_03852 0.42 +0.7 203,135 + BACOVA_03852 0.42 +0.5 203,135 + BACOVA_03852 0.42 -0.2 203,136 - BACOVA_03852 0.42 +0.4 203,136 - BACOVA_03852 0.42 +1.1 203,136 - BACOVA_03852 0.42 +1.0 203,140 + BACOVA_03852 0.42 -2.5 203,255 - BACOVA_03852 0.50 -0.3 203,267 + BACOVA_03852 0.51 +1.8 203,268 - BACOVA_03852 0.51 +0.3 203,371 + BACOVA_03852 0.58 +0.7 203,447 - BACOVA_03852 0.63 -0.3 203,516 + BACOVA_03852 0.68 +0.1 203,516 + BACOVA_03852 0.68 -1.1 203,517 - BACOVA_03852 0.68 -1.0 203,518 + BACOVA_03852 0.68 -0.1 203,553 - BACOVA_03852 0.71 -1.6 203,566 + BACOVA_03852 0.72 +0.1 203,690 - BACOVA_03852 0.80 -0.3 203,756 - BACOVA_03852 0.85 +0.1 203,950 + -2.8 203,950 + -0.9 203,952 + -0.7 203,955 + +1.0 204,012 + +0.5 204,053 - BACOVA_03853 0.20 -1.2 204,096 - BACOVA_03853 0.31 -0.0 204,188 + BACOVA_03853 0.54 -1.0 204,189 - BACOVA_03853 0.54 -0.2 204,189 - BACOVA_03853 0.54 -0.3 204,276 + BACOVA_03853 0.76 +0.9 204,276 + BACOVA_03853 0.76 -1.7 204,285 - BACOVA_03853 0.79 +1.3 204,358 - -1.3 204,359 + +0.7 204,439 - +1.7 204,439 - -1.2 204,440 + +0.6 204,441 - +0.9 204,448 - -0.4 204,456 + +1.1 204,456 + -1.1 204,457 - -0.8 204,510 - -0.9 204,574 + BACOVA_03854 0.14 +0.1 204,664 + BACOVA_03854 0.21 -1.2 204,664 + BACOVA_03854 0.21 -2.0 204,665 - BACOVA_03854 0.21 +0.7 204,665 - BACOVA_03854 0.21 +1.4 204,713 - BACOVA_03854 0.25 -0.4 204,713 - BACOVA_03854 0.25 -0.9 204,733 + BACOVA_03854 0.26 -0.2 204,785 - BACOVA_03854 0.30 +0.4 204,787 - BACOVA_03854 0.30 -1.9 204,787 - BACOVA_03854 0.30 -0.8 204,874 + BACOVA_03854 0.37 -1.0 204,874 + BACOVA_03854 0.37 -0.8 204,874 + BACOVA_03854 0.37 +0.6 204,875 - BACOVA_03854 0.37 -0.5 204,875 - BACOVA_03854 0.37 -2.1 204,878 + BACOVA_03854 0.37 +0.7 204,879 - BACOVA_03854 0.37 +0.9 204,879 - BACOVA_03854 0.37 -0.7
Or see this region's nucleotide sequence