Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03627

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03626 and BACOVA_03627 are separated by 59 nucleotidesBACOVA_03627 and BACOVA_03628 are separated by 79 nucleotides BACOVA_03626: BACOVA_03626 - hypothetical protein, at 433,466 to 434,911 _03626 BACOVA_03627: BACOVA_03627 - glycosyl hydrolase family 76, at 434,971 to 436,101 _03627 BACOVA_03628: BACOVA_03628 - endonuclease/exonuclease/phosphatase family protein, at 436,181 to 437,131 _03628 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 433.993 kb on + strand, within BACOVA_03626at 433.993 kb on + strand, within BACOVA_03626at 433.993 kb on + strand, within BACOVA_03626at 433.994 kb on - strand, within BACOVA_03626at 433.997 kb on - strand, within BACOVA_03626at 434.061 kb on + strand, within BACOVA_03626at 434.066 kb on + strand, within BACOVA_03626at 434.157 kb on - strand, within BACOVA_03626at 434.157 kb on - strand, within BACOVA_03626at 434.188 kb on + strand, within BACOVA_03626at 434.209 kb on - strand, within BACOVA_03626at 434.309 kb on + strand, within BACOVA_03626at 434.310 kb on - strand, within BACOVA_03626at 434.312 kb on - strand, within BACOVA_03626at 434.343 kb on + strand, within BACOVA_03626at 434.357 kb on - strand, within BACOVA_03626at 434.559 kb on + strand, within BACOVA_03626at 434.560 kb on - strand, within BACOVA_03626at 434.567 kb on + strand, within BACOVA_03626at 434.567 kb on + strand, within BACOVA_03626at 434.568 kb on - strand, within BACOVA_03626at 434.614 kb on + strand, within BACOVA_03626at 434.627 kb on - strand, within BACOVA_03626at 434.653 kb on + strand, within BACOVA_03626at 434.653 kb on + strand, within BACOVA_03626at 434.653 kb on + strand, within BACOVA_03626at 434.654 kb on - strand, within BACOVA_03626at 434.811 kb on + strandat 434.847 kb on - strandat 434.857 kb on + strandat 434.858 kb on - strandat 434.904 kb on - strandat 434.904 kb on - strandat 434.914 kb on + strandat 434.914 kb on + strandat 434.973 kb on - strandat 435.022 kb on - strandat 435.059 kb on - strandat 435.147 kb on + strand, within BACOVA_03627at 435.148 kb on - strand, within BACOVA_03627at 435.172 kb on + strand, within BACOVA_03627at 435.322 kb on + strand, within BACOVA_03627at 435.360 kb on - strand, within BACOVA_03627at 435.394 kb on - strand, within BACOVA_03627at 435.405 kb on - strand, within BACOVA_03627at 435.450 kb on - strand, within BACOVA_03627at 435.479 kb on - strand, within BACOVA_03627at 435.540 kb on + strand, within BACOVA_03627at 435.540 kb on + strand, within BACOVA_03627at 435.609 kb on - strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.614 kb on + strand, within BACOVA_03627at 435.615 kb on - strand, within BACOVA_03627at 435.615 kb on - strand, within BACOVA_03627at 435.668 kb on + strand, within BACOVA_03627at 435.702 kb on + strand, within BACOVA_03627at 435.713 kb on + strand, within BACOVA_03627at 435.714 kb on - strand, within BACOVA_03627at 435.782 kb on + strand, within BACOVA_03627at 435.782 kb on + strand, within BACOVA_03627at 435.851 kb on + strand, within BACOVA_03627at 435.851 kb on + strand, within BACOVA_03627at 435.852 kb on - strand, within BACOVA_03627at 436.007 kb on - strandat 436.015 kb on + strandat 436.086 kb on + strandat 436.119 kb on + strandat 436.120 kb on - strandat 436.120 kb on - strandat 436.165 kb on + strandat 436.166 kb on - strandat 436.173 kb on + strandat 436.174 kb on - strandat 436.174 kb on - strandat 436.314 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.327 kb on - strand, within BACOVA_03628at 436.330 kb on + strand, within BACOVA_03628at 436.331 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.348 kb on - strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.379 kb on + strand, within BACOVA_03628at 436.380 kb on - strand, within BACOVA_03628at 436.382 kb on - strand, within BACOVA_03628at 436.403 kb on - strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.441 kb on + strand, within BACOVA_03628at 436.442 kb on - strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.506 kb on + strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.507 kb on - strand, within BACOVA_03628at 436.675 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.708 kb on + strand, within BACOVA_03628at 436.813 kb on + strand, within BACOVA_03628at 436.854 kb on - strand, within BACOVA_03628at 436.863 kb on + strand, within BACOVA_03628at 436.864 kb on - strand, within BACOVA_03628at 436.891 kb on + strand, within BACOVA_03628at 437.051 kb on - strandat 437.064 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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433,993 + BACOVA_03626 0.36 -1.3
433,993 + BACOVA_03626 0.36 -0.3
433,993 + BACOVA_03626 0.36 -1.2
433,994 - BACOVA_03626 0.37 -0.8
433,997 - BACOVA_03626 0.37 -1.1
434,061 + BACOVA_03626 0.41 -0.8
434,066 + BACOVA_03626 0.41 -0.3
434,157 - BACOVA_03626 0.48 -0.2
434,157 - BACOVA_03626 0.48 -0.8
434,188 + BACOVA_03626 0.50 -0.8
434,209 - BACOVA_03626 0.51 -1.3
434,309 + BACOVA_03626 0.58 -1.7
434,310 - BACOVA_03626 0.58 +0.2
434,312 - BACOVA_03626 0.59 -0.6
434,343 + BACOVA_03626 0.61 -1.6
434,357 - BACOVA_03626 0.62 -0.1
434,559 + BACOVA_03626 0.76 +0.1
434,560 - BACOVA_03626 0.76 -0.2
434,567 + BACOVA_03626 0.76 +0.5
434,567 + BACOVA_03626 0.76 -0.1
434,568 - BACOVA_03626 0.76 -0.3
434,614 + BACOVA_03626 0.79 -0.5
434,627 - BACOVA_03626 0.80 +1.9
434,653 + BACOVA_03626 0.82 -1.6
434,653 + BACOVA_03626 0.82 -2.3
434,653 + BACOVA_03626 0.82 +0.7
434,654 - BACOVA_03626 0.82 -1.3
434,811 + -1.4
434,847 - +1.3
434,857 + -1.0
434,858 - -1.0
434,904 - -0.7
434,904 - -1.9
434,914 + +0.1
434,914 + +0.3
434,973 - +0.6
435,022 - +1.3
435,059 - +0.9
435,147 + BACOVA_03627 0.16 -0.6
435,148 - BACOVA_03627 0.16 -0.6
435,172 + BACOVA_03627 0.18 -0.4
435,322 + BACOVA_03627 0.31 -2.6
435,360 - BACOVA_03627 0.34 -1.1
435,394 - BACOVA_03627 0.37 -3.1
435,405 - BACOVA_03627 0.38 -2.0
435,450 - BACOVA_03627 0.42 -4.3
435,479 - BACOVA_03627 0.45 -0.7
435,540 + BACOVA_03627 0.50 -1.3
435,540 + BACOVA_03627 0.50 -0.9
435,609 - BACOVA_03627 0.56 -0.8
435,614 + BACOVA_03627 0.57 -0.4
435,614 + BACOVA_03627 0.57 -0.5
435,614 + BACOVA_03627 0.57 -2.7
435,615 - BACOVA_03627 0.57 -1.1
435,615 - BACOVA_03627 0.57 -0.8
435,668 + BACOVA_03627 0.62 +0.3
435,702 + BACOVA_03627 0.65 -2.0
435,713 + BACOVA_03627 0.66 +0.1
435,714 - BACOVA_03627 0.66 -0.3
435,782 + BACOVA_03627 0.72 -0.7
435,782 + BACOVA_03627 0.72 -0.2
435,851 + BACOVA_03627 0.78 -2.2
435,851 + BACOVA_03627 0.78 +0.7
435,852 - BACOVA_03627 0.78 +0.1
436,007 - -2.6
436,015 + +0.9
436,086 + -1.5
436,119 + -0.5
436,120 - -1.0
436,120 - -0.3
436,165 + -0.2
436,166 - +1.5
436,173 + -1.2
436,174 - +0.6
436,174 - +1.0
436,314 - BACOVA_03628 0.14 +0.7
436,327 - BACOVA_03628 0.15 +0.5
436,327 - BACOVA_03628 0.15 +0.4
436,330 + BACOVA_03628 0.16 -2.0
436,331 - BACOVA_03628 0.16 +1.2
436,348 - BACOVA_03628 0.18 -0.2
436,348 - BACOVA_03628 0.18 +1.1
436,348 - BACOVA_03628 0.18 +1.8
436,379 + BACOVA_03628 0.21 -2.1
436,379 + BACOVA_03628 0.21 -0.2
436,379 + BACOVA_03628 0.21 -0.5
436,380 - BACOVA_03628 0.21 +2.2
436,382 - BACOVA_03628 0.21 +1.9
436,403 - BACOVA_03628 0.23 +0.8
436,441 + BACOVA_03628 0.27 -1.4
436,441 + BACOVA_03628 0.27 -1.0
436,442 - BACOVA_03628 0.27 -0.2
436,506 + BACOVA_03628 0.34 -0.5
436,506 + BACOVA_03628 0.34 -1.8
436,506 + BACOVA_03628 0.34 +0.2
436,506 + BACOVA_03628 0.34 +1.2
436,507 - BACOVA_03628 0.34 +1.2
436,507 - BACOVA_03628 0.34 +0.3
436,507 - BACOVA_03628 0.34 +0.9
436,675 + BACOVA_03628 0.52 -0.0
436,708 + BACOVA_03628 0.55 -1.3
436,708 + BACOVA_03628 0.55 -1.3
436,813 + BACOVA_03628 0.66 +0.2
436,854 - BACOVA_03628 0.71 +0.1
436,863 + BACOVA_03628 0.72 -1.0
436,864 - BACOVA_03628 0.72 +0.2
436,891 + BACOVA_03628 0.75 -0.9
437,051 - +0.9
437,064 + -1.3

Or see this region's nucleotide sequence