Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03540 and BACOVA_03541 are separated by 108 nucleotides BACOVA_03541 and BACOVA_03542 are separated by 56 nucleotides BACOVA_03542 and BACOVA_03543 overlap by 1 nucleotides
BACOVA_03540: BACOVA_03540 - glutamate racemase, at 314,546 to 315,388
_03540
BACOVA_03541: BACOVA_03541 - outer membrane protein, at 315,497 to 316,012
_03541
BACOVA_03542: BACOVA_03542 - outer membrane protein, at 316,069 to 316,608
_03542
BACOVA_03543: BACOVA_03543 - outer membrane protein assembly complex, YaeT protein, at 316,608 to 319,262
_03543
Position (kb) 316
317 Strain fitness (log2 ratio) -1
0
1 at 315.403 kb on - strand at 315.498 kb on + strand at 316.108 kb on - strand at 316.110 kb on + strand at 316.110 kb on + strand at 316.111 kb on - strand at 316.115 kb on - strand at 316.115 kb on - strand at 316.115 kb on - strand at 316.133 kb on - strand, within BACOVA_03542 at 316.136 kb on - strand, within BACOVA_03542 at 316.143 kb on + strand, within BACOVA_03542 at 316.163 kb on - strand, within BACOVA_03542 at 316.167 kb on + strand, within BACOVA_03542 at 316.168 kb on - strand, within BACOVA_03542 at 316.168 kb on - strand, within BACOVA_03542 at 316.168 kb on - strand, within BACOVA_03542 at 316.173 kb on - strand, within BACOVA_03542 at 316.189 kb on + strand, within BACOVA_03542 at 316.192 kb on - strand, within BACOVA_03542 at 316.209 kb on - strand, within BACOVA_03542 at 316.278 kb on - strand, within BACOVA_03542 at 316.278 kb on - strand, within BACOVA_03542 at 316.278 kb on - strand, within BACOVA_03542 at 316.377 kb on - strand, within BACOVA_03542 at 316.400 kb on - strand, within BACOVA_03542 at 316.552 kb on + strand, within BACOVA_03542 at 316.584 kb on + strand at 316.585 kb on - strand at 316.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 315,403 - -0.8 315,498 + -1.4 316,108 - +0.4 316,110 + -1.7 316,110 + -1.7 316,111 - -0.4 316,115 - -1.3 316,115 - -1.4 316,115 - +0.9 316,133 - BACOVA_03542 0.12 +0.5 316,136 - BACOVA_03542 0.12 -0.9 316,143 + BACOVA_03542 0.14 +0.4 316,163 - BACOVA_03542 0.17 +0.5 316,167 + BACOVA_03542 0.18 -0.1 316,168 - BACOVA_03542 0.18 -0.4 316,168 - BACOVA_03542 0.18 -0.6 316,168 - BACOVA_03542 0.18 +0.0 316,173 - BACOVA_03542 0.19 -0.8 316,189 + BACOVA_03542 0.22 -0.6 316,192 - BACOVA_03542 0.23 +1.2 316,209 - BACOVA_03542 0.26 -0.7 316,278 - BACOVA_03542 0.39 -1.3 316,278 - BACOVA_03542 0.39 -0.3 316,278 - BACOVA_03542 0.39 -0.9 316,377 - BACOVA_03542 0.57 -0.8 316,400 - BACOVA_03542 0.61 +0.1 316,552 + BACOVA_03542 0.89 -0.2 316,584 + -0.8 316,585 - -1.6 316,605 - +1.4
Or see this region's nucleotide sequence