Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03340 and BACOVA_03341 are separated by 23 nucleotides BACOVA_03341 and BACOVA_03342 are separated by 73 nucleotides
BACOVA_03340: BACOVA_03340 - SusD family protein, at 32,481 to 34,400
_03340
BACOVA_03341: BACOVA_03341 - glycosyl hydrolase family 76, at 34,424 to 35,746
_03341
BACOVA_03342: BACOVA_03342 - hypothetical protein, at 35,820 to 36,914
_03342
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.443 kb on - strand, within BACOVA_03340 at 33.539 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.561 kb on + strand, within BACOVA_03340 at 33.562 kb on - strand, within BACOVA_03340 at 33.562 kb on - strand, within BACOVA_03340 at 33.563 kb on - strand, within BACOVA_03340 at 33.564 kb on - strand, within BACOVA_03340 at 33.564 kb on - strand, within BACOVA_03340 at 33.573 kb on - strand, within BACOVA_03340 at 33.601 kb on + strand, within BACOVA_03340 at 33.602 kb on - strand, within BACOVA_03340 at 33.609 kb on + strand, within BACOVA_03340 at 33.610 kb on - strand, within BACOVA_03340 at 33.635 kb on + strand, within BACOVA_03340 at 33.647 kb on + strand, within BACOVA_03340 at 33.691 kb on - strand, within BACOVA_03340 at 33.694 kb on + strand, within BACOVA_03340 at 33.710 kb on + strand, within BACOVA_03340 at 33.711 kb on - strand, within BACOVA_03340 at 33.738 kb on - strand, within BACOVA_03340 at 33.743 kb on - strand, within BACOVA_03340 at 33.743 kb on - strand, within BACOVA_03340 at 33.744 kb on + strand, within BACOVA_03340 at 33.744 kb on + strand, within BACOVA_03340 at 33.745 kb on - strand, within BACOVA_03340 at 33.771 kb on + strand, within BACOVA_03340 at 33.771 kb on + strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.772 kb on - strand, within BACOVA_03340 at 33.800 kb on - strand, within BACOVA_03340 at 33.800 kb on - strand, within BACOVA_03340 at 33.806 kb on + strand, within BACOVA_03340 at 33.816 kb on - strand, within BACOVA_03340 at 33.849 kb on + strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.850 kb on - strand, within BACOVA_03340 at 33.851 kb on + strand, within BACOVA_03340 at 33.851 kb on + strand, within BACOVA_03340 at 33.853 kb on + strand, within BACOVA_03340 at 33.854 kb on - strand, within BACOVA_03340 at 33.857 kb on - strand, within BACOVA_03340 at 33.867 kb on + strand, within BACOVA_03340 at 33.896 kb on + strand, within BACOVA_03340 at 33.908 kb on + strand, within BACOVA_03340 at 33.909 kb on - strand, within BACOVA_03340 at 33.909 kb on - strand, within BACOVA_03340 at 33.915 kb on - strand, within BACOVA_03340 at 33.921 kb on + strand, within BACOVA_03340 at 33.922 kb on - strand, within BACOVA_03340 at 33.993 kb on - strand, within BACOVA_03340 at 34.059 kb on + strand, within BACOVA_03340 at 34.059 kb on + strand, within BACOVA_03340 at 34.130 kb on + strand, within BACOVA_03340 at 34.131 kb on - strand, within BACOVA_03340 at 34.228 kb on + strand at 34.237 kb on - strand at 34.237 kb on - strand at 34.317 kb on - strand at 34.345 kb on + strand at 34.364 kb on + strand at 34.364 kb on + strand at 34.389 kb on - strand at 34.398 kb on + strand at 34.399 kb on - strand at 34.403 kb on - strand at 34.410 kb on - strand at 34.437 kb on - strand at 34.477 kb on + strand at 34.478 kb on - strand at 34.498 kb on + strand at 34.514 kb on + strand at 34.515 kb on - strand at 34.517 kb on - strand at 34.546 kb on + strand at 34.546 kb on + strand at 34.617 kb on - strand, within BACOVA_03341 at 34.635 kb on - strand, within BACOVA_03341 at 34.636 kb on + strand, within BACOVA_03341 at 34.637 kb on - strand, within BACOVA_03341 at 34.657 kb on + strand, within BACOVA_03341 at 34.716 kb on - strand, within BACOVA_03341 at 34.717 kb on + strand, within BACOVA_03341 at 34.717 kb on + strand, within BACOVA_03341 at 34.760 kb on + strand, within BACOVA_03341 at 34.761 kb on - strand, within BACOVA_03341 at 34.805 kb on + strand, within BACOVA_03341 at 34.805 kb on + strand, within BACOVA_03341 at 34.806 kb on - strand, within BACOVA_03341 at 34.828 kb on + strand, within BACOVA_03341 at 34.832 kb on - strand, within BACOVA_03341 at 34.852 kb on + strand, within BACOVA_03341 at 34.857 kb on - strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.866 kb on + strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.867 kb on - strand, within BACOVA_03341 at 34.923 kb on - strand, within BACOVA_03341 at 34.956 kb on + strand, within BACOVA_03341 at 34.962 kb on - strand, within BACOVA_03341 at 34.995 kb on - strand, within BACOVA_03341 at 35.026 kb on + strand, within BACOVA_03341 at 35.027 kb on - strand, within BACOVA_03341 at 35.048 kb on - strand, within BACOVA_03341 at 35.083 kb on + strand, within BACOVA_03341 at 35.084 kb on - strand, within BACOVA_03341 at 35.133 kb on - strand, within BACOVA_03341 at 35.146 kb on + strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.186 kb on - strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.188 kb on + strand, within BACOVA_03341 at 35.192 kb on + strand, within BACOVA_03341 at 35.234 kb on + strand, within BACOVA_03341 at 35.353 kb on - strand, within BACOVA_03341 at 35.385 kb on + strand, within BACOVA_03341 at 35.393 kb on + strand, within BACOVA_03341 at 35.395 kb on + strand, within BACOVA_03341 at 35.474 kb on + strand, within BACOVA_03341 at 35.513 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.538 kb on - strand, within BACOVA_03341 at 35.580 kb on + strand, within BACOVA_03341 at 35.597 kb on - strand, within BACOVA_03341 at 35.603 kb on - strand, within BACOVA_03341 at 35.617 kb on + strand at 35.635 kb on + strand at 35.654 kb on + strand at 35.660 kb on - strand at 35.670 kb on + strand at 35.671 kb on - strand at 35.680 kb on + strand at 35.680 kb on + strand at 35.681 kb on - strand at 35.681 kb on - strand at 35.693 kb on + strand at 35.693 kb on + strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.694 kb on - strand at 35.741 kb on - strand at 35.770 kb on + strand at 35.777 kb on + strand at 35.785 kb on - strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.808 kb on + strand at 35.815 kb on + strand at 35.871 kb on + strand at 35.874 kb on - strand at 35.897 kb on + strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.898 kb on - strand at 35.901 kb on + strand at 35.902 kb on - strand at 35.902 kb on - strand at 35.969 kb on + strand, within BACOVA_03342 at 35.969 kb on + strand, within BACOVA_03342 at 35.971 kb on - strand, within BACOVA_03342 at 36.019 kb on + strand, within BACOVA_03342 at 36.041 kb on - strand, within BACOVA_03342 at 36.055 kb on - strand, within BACOVA_03342 at 36.117 kb on - strand, within BACOVA_03342 at 36.208 kb on - strand, within BACOVA_03342 at 36.224 kb on + strand, within BACOVA_03342 at 36.225 kb on - strand, within BACOVA_03342 at 36.235 kb on - strand, within BACOVA_03342 at 36.319 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.337 kb on - strand, within BACOVA_03342 at 36.359 kb on + strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.376 kb on - strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.383 kb on + strand, within BACOVA_03342 at 36.402 kb on + strand, within BACOVA_03342 at 36.495 kb on + strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.496 kb on - strand, within BACOVA_03342 at 36.594 kb on + strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.595 kb on - strand, within BACOVA_03342 at 36.597 kb on - strand, within BACOVA_03342 at 36.618 kb on + strand, within BACOVA_03342 at 36.620 kb on + strand, within BACOVA_03342 at 36.649 kb on - strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.650 kb on + strand, within BACOVA_03342 at 36.651 kb on - strand, within BACOVA_03342 at 36.665 kb on + strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.666 kb on - strand, within BACOVA_03342 at 36.739 kb on - strand, within BACOVA_03342
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 33,443 - BACOVA_03340 0.50 -1.4 33,539 + BACOVA_03340 0.55 -0.7 33,561 + BACOVA_03340 0.56 -2.0 33,561 + BACOVA_03340 0.56 -1.4 33,561 + BACOVA_03340 0.56 -0.5 33,562 - BACOVA_03340 0.56 -0.5 33,562 - BACOVA_03340 0.56 +0.5 33,563 - BACOVA_03340 0.56 -0.2 33,564 - BACOVA_03340 0.56 -0.5 33,564 - BACOVA_03340 0.56 +0.9 33,573 - BACOVA_03340 0.57 -1.0 33,601 + BACOVA_03340 0.58 -2.5 33,602 - BACOVA_03340 0.58 +0.5 33,609 + BACOVA_03340 0.59 -1.1 33,610 - BACOVA_03340 0.59 +0.8 33,635 + BACOVA_03340 0.60 -1.7 33,647 + BACOVA_03340 0.61 -2.1 33,691 - BACOVA_03340 0.63 +0.4 33,694 + BACOVA_03340 0.63 -1.9 33,710 + BACOVA_03340 0.64 -1.1 33,711 - BACOVA_03340 0.64 +0.5 33,738 - BACOVA_03340 0.65 +0.5 33,743 - BACOVA_03340 0.66 +0.6 33,743 - BACOVA_03340 0.66 -2.3 33,744 + BACOVA_03340 0.66 +0.6 33,744 + BACOVA_03340 0.66 -0.2 33,745 - BACOVA_03340 0.66 -0.6 33,771 + BACOVA_03340 0.67 -2.7 33,771 + BACOVA_03340 0.67 -2.3 33,772 - BACOVA_03340 0.67 -1.8 33,772 - BACOVA_03340 0.67 +1.8 33,772 - BACOVA_03340 0.67 -1.0 33,800 - BACOVA_03340 0.69 -0.2 33,800 - BACOVA_03340 0.69 +1.2 33,806 + BACOVA_03340 0.69 -1.7 33,816 - BACOVA_03340 0.70 -1.1 33,849 + BACOVA_03340 0.71 -1.6 33,850 - BACOVA_03340 0.71 +0.3 33,850 - BACOVA_03340 0.71 -1.0 33,850 - BACOVA_03340 0.71 -0.4 33,851 + BACOVA_03340 0.71 -2.7 33,851 + BACOVA_03340 0.71 -1.4 33,853 + BACOVA_03340 0.71 -0.5 33,854 - BACOVA_03340 0.72 +0.2 33,857 - BACOVA_03340 0.72 +1.5 33,867 + BACOVA_03340 0.72 -0.7 33,896 + BACOVA_03340 0.74 -1.5 33,908 + BACOVA_03340 0.74 -2.3 33,909 - BACOVA_03340 0.74 +0.3 33,909 - BACOVA_03340 0.74 -0.7 33,915 - BACOVA_03340 0.75 -0.1 33,921 + BACOVA_03340 0.75 -1.2 33,922 - BACOVA_03340 0.75 -0.2 33,993 - BACOVA_03340 0.79 -0.8 34,059 + BACOVA_03340 0.82 -1.7 34,059 + BACOVA_03340 0.82 -2.3 34,130 + BACOVA_03340 0.86 -2.0 34,131 - BACOVA_03340 0.86 -0.5 34,228 + -1.7 34,237 - +1.4 34,237 - -0.6 34,317 - -0.1 34,345 + -2.2 34,364 + -1.7 34,364 + -2.7 34,389 - +1.5 34,398 + -0.5 34,399 - +0.8 34,403 - -0.4 34,410 - +0.3 34,437 - +0.0 34,477 + -2.7 34,478 - +0.3 34,498 + +0.2 34,514 + -2.5 34,515 - +0.9 34,517 - -0.3 34,546 + -1.5 34,546 + -1.8 34,617 - BACOVA_03341 0.15 -2.5 34,635 - BACOVA_03341 0.16 +1.9 34,636 + BACOVA_03341 0.16 +0.1 34,637 - BACOVA_03341 0.16 -1.3 34,657 + BACOVA_03341 0.18 -2.2 34,716 - BACOVA_03341 0.22 -0.8 34,717 + BACOVA_03341 0.22 +0.3 34,717 + BACOVA_03341 0.22 -2.9 34,760 + BACOVA_03341 0.25 +0.2 34,761 - BACOVA_03341 0.25 -1.4 34,805 + BACOVA_03341 0.29 -2.3 34,805 + BACOVA_03341 0.29 -1.6 34,806 - BACOVA_03341 0.29 +0.0 34,828 + BACOVA_03341 0.31 -0.3 34,832 - BACOVA_03341 0.31 +0.6 34,852 + BACOVA_03341 0.32 -2.3 34,857 - BACOVA_03341 0.33 +2.1 34,866 + BACOVA_03341 0.33 -0.1 34,866 + BACOVA_03341 0.33 -2.3 34,867 - BACOVA_03341 0.33 +0.8 34,867 - BACOVA_03341 0.33 -0.2 34,923 - BACOVA_03341 0.38 -0.1 34,956 + BACOVA_03341 0.40 -1.7 34,962 - BACOVA_03341 0.41 +0.9 34,995 - BACOVA_03341 0.43 +1.2 35,026 + BACOVA_03341 0.46 -0.9 35,027 - BACOVA_03341 0.46 -0.6 35,048 - BACOVA_03341 0.47 -0.5 35,083 + BACOVA_03341 0.50 -2.8 35,084 - BACOVA_03341 0.50 -0.6 35,133 - BACOVA_03341 0.54 -0.4 35,146 + BACOVA_03341 0.55 -0.7 35,186 - BACOVA_03341 0.58 -0.4 35,186 - BACOVA_03341 0.58 -0.8 35,188 + BACOVA_03341 0.58 -1.6 35,188 + BACOVA_03341 0.58 -0.3 35,192 + BACOVA_03341 0.58 -2.2 35,234 + BACOVA_03341 0.61 -0.9 35,353 - BACOVA_03341 0.70 -0.8 35,385 + BACOVA_03341 0.73 -2.1 35,393 + BACOVA_03341 0.73 +1.9 35,395 + BACOVA_03341 0.73 -2.1 35,474 + BACOVA_03341 0.79 -2.0 35,513 - BACOVA_03341 0.82 +0.1 35,538 - BACOVA_03341 0.84 +0.5 35,538 - BACOVA_03341 0.84 +0.1 35,538 - BACOVA_03341 0.84 +0.5 35,580 + BACOVA_03341 0.87 +1.8 35,597 - BACOVA_03341 0.89 -0.0 35,603 - BACOVA_03341 0.89 +0.6 35,617 + -1.1 35,635 + -1.6 35,654 + -1.0 35,660 - -0.1 35,670 + -1.3 35,671 - +0.6 35,680 + -2.1 35,680 + -1.7 35,681 - -0.7 35,681 - -0.8 35,693 + -2.2 35,693 + -2.4 35,694 - -0.4 35,694 - +0.9 35,694 - -0.2 35,694 - +0.0 35,741 - +0.2 35,770 + -0.2 35,777 + -1.2 35,785 - +1.3 35,808 + -1.7 35,808 + -1.5 35,808 + -1.9 35,815 + -2.3 35,871 + -1.4 35,874 - -0.6 35,897 + -2.7 35,898 - -0.3 35,898 - -0.6 35,898 - +0.4 35,901 + -1.9 35,902 - +0.5 35,902 - +0.3 35,969 + BACOVA_03342 0.14 -1.1 35,969 + BACOVA_03342 0.14 -0.2 35,971 - BACOVA_03342 0.14 +1.1 36,019 + BACOVA_03342 0.18 -1.3 36,041 - BACOVA_03342 0.20 +0.2 36,055 - BACOVA_03342 0.21 -0.0 36,117 - BACOVA_03342 0.27 -1.2 36,208 - BACOVA_03342 0.35 -0.7 36,224 + BACOVA_03342 0.37 -0.5 36,225 - BACOVA_03342 0.37 -0.5 36,235 - BACOVA_03342 0.38 +0.4 36,319 - BACOVA_03342 0.46 +0.2 36,337 - BACOVA_03342 0.47 -0.2 36,337 - BACOVA_03342 0.47 -0.7 36,359 + BACOVA_03342 0.49 -1.7 36,376 - BACOVA_03342 0.51 +0.6 36,376 - BACOVA_03342 0.51 +0.2 36,383 + BACOVA_03342 0.51 +0.5 36,383 + BACOVA_03342 0.51 -2.9 36,402 + BACOVA_03342 0.53 -2.7 36,495 + BACOVA_03342 0.62 -3.1 36,496 - BACOVA_03342 0.62 +0.5 36,496 - BACOVA_03342 0.62 +0.4 36,594 + BACOVA_03342 0.71 -0.2 36,595 - BACOVA_03342 0.71 -0.4 36,595 - BACOVA_03342 0.71 -1.2 36,597 - BACOVA_03342 0.71 -0.4 36,618 + BACOVA_03342 0.73 -0.9 36,620 + BACOVA_03342 0.73 -1.4 36,649 - BACOVA_03342 0.76 -0.2 36,650 + BACOVA_03342 0.76 -0.8 36,650 + BACOVA_03342 0.76 -1.8 36,651 - BACOVA_03342 0.76 -0.8 36,665 + BACOVA_03342 0.77 -0.5 36,666 - BACOVA_03342 0.77 -0.2 36,666 - BACOVA_03342 0.77 +0.6 36,666 - BACOVA_03342 0.77 -0.9 36,739 - BACOVA_03342 0.84 +0.1
Or see this region's nucleotide sequence