Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03243

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03241 and BACOVA_03242 are separated by 142 nucleotidesBACOVA_03242 and BACOVA_03243 are separated by 331 nucleotidesBACOVA_03243 and BACOVA_03244 overlap by 4 nucleotidesBACOVA_03244 and BACOVA_03245 are separated by 20 nucleotidesBACOVA_03245 and BACOVA_03246 are separated by 35 nucleotides BACOVA_03241: BACOVA_03241 - hypothetical protein, at 334,127 to 334,372 _03241 BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994 _03242 BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592 _03243 BACOVA_03244: BACOVA_03244 - hypothetical protein, at 335,589 to 335,723 _03244 BACOVA_03245: BACOVA_03245 - hypothetical protein, at 335,744 to 335,947 _03245 BACOVA_03246: BACOVA_03246 - putative DNA-binding protein, at 335,983 to 336,582 _03246 Position (kb) 335 336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 334.379 kb on - strandat 334.384 kb on - strandat 334.401 kb on + strandat 334.402 kb on - strandat 334.408 kb on - strandat 334.439 kb on - strandat 334.497 kb on - strandat 334.516 kb on + strandat 334.517 kb on - strandat 334.637 kb on + strand, within BACOVA_03242at 334.638 kb on - strand, within BACOVA_03242at 334.641 kb on + strand, within BACOVA_03242at 334.642 kb on - strand, within BACOVA_03242at 334.703 kb on + strand, within BACOVA_03242at 334.830 kb on + strand, within BACOVA_03242at 334.869 kb on - strand, within BACOVA_03242at 334.927 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.931 kb on - strand, within BACOVA_03242at 334.982 kb on - strandat 334.985 kb on + strandat 334.986 kb on - strandat 335.028 kb on + strandat 335.061 kb on - strandat 335.063 kb on + strandat 335.064 kb on - strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.098 kb on + strandat 335.105 kb on - strandat 335.109 kb on - strandat 335.162 kb on + strandat 335.163 kb on - strandat 335.164 kb on + strandat 335.193 kb on + strandat 335.193 kb on + strandat 335.194 kb on - strandat 335.244 kb on - strandat 335.279 kb on - strandat 335.288 kb on - strandat 335.293 kb on + strandat 335.294 kb on - strandat 335.294 kb on - strandat 335.298 kb on - strandat 335.300 kb on + strandat 335.310 kb on + strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.314 kb on - strandat 335.320 kb on - strandat 335.321 kb on + strandat 335.321 kb on + strandat 335.326 kb on - strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.330 kb on + strandat 335.331 kb on - strandat 335.430 kb on + strand, within BACOVA_03243at 335.431 kb on - strand, within BACOVA_03243at 335.437 kb on + strand, within BACOVA_03243at 335.440 kb on - strand, within BACOVA_03243at 335.464 kb on - strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.480 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.518 kb on + strand, within BACOVA_03243at 335.530 kb on - strand, within BACOVA_03243at 335.537 kb on + strand, within BACOVA_03243at 335.538 kb on - strand, within BACOVA_03243at 335.567 kb on - strandat 335.589 kb on - strandat 335.598 kb on + strandat 335.598 kb on + strandat 335.607 kb on - strand, within BACOVA_03244at 335.607 kb on - strand, within BACOVA_03244at 335.610 kb on - strand, within BACOVA_03244at 335.620 kb on + strand, within BACOVA_03244at 335.621 kb on - strand, within BACOVA_03244at 335.717 kb on + strandat 335.718 kb on - strandat 335.721 kb on + strandat 335.722 kb on - strandat 335.722 kb on - strandat 335.722 kb on - strandat 335.744 kb on - strandat 335.748 kb on + strandat 335.749 kb on - strandat 335.754 kb on + strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.755 kb on - strandat 335.758 kb on - strandat 335.758 kb on - strandat 335.760 kb on + strandat 335.771 kb on + strand, within BACOVA_03245at 335.771 kb on + strand, within BACOVA_03245at 335.810 kb on - strand, within BACOVA_03245at 335.840 kb on + strand, within BACOVA_03245at 335.840 kb on + strand, within BACOVA_03245at 335.842 kb on + strand, within BACOVA_03245at 335.843 kb on - strand, within BACOVA_03245at 335.843 kb on - strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.845 kb on + strand, within BACOVA_03245at 335.846 kb on - strand, within BACOVA_03245at 335.846 kb on - strand, within BACOVA_03245at 335.848 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.853 kb on + strand, within BACOVA_03245at 335.854 kb on - strand, within BACOVA_03245at 335.854 kb on - strand, within BACOVA_03245at 335.855 kb on + strand, within BACOVA_03245at 335.855 kb on + strand, within BACOVA_03245at 335.856 kb on - strand, within BACOVA_03245at 335.889 kb on + strand, within BACOVA_03245at 335.906 kb on + strand, within BACOVA_03245at 335.907 kb on - strand, within BACOVA_03245at 335.945 kb on + strandat 335.946 kb on - strandat 335.963 kb on + strandat 335.964 kb on - strandat 335.985 kb on - strandat 335.986 kb on + strandat 335.987 kb on - strandat 335.987 kb on - strandat 335.992 kb on + strandat 335.992 kb on + strandat 335.994 kb on + strandat 335.994 kb on + strandat 335.995 kb on - strandat 335.997 kb on - strandat 335.997 kb on - strandat 335.998 kb on + strandat 335.999 kb on - strandat 336.042 kb on + strandat 336.043 kb on - strand, within BACOVA_03246at 336.099 kb on + strand, within BACOVA_03246at 336.099 kb on + strand, within BACOVA_03246at 336.121 kb on + strand, within BACOVA_03246at 336.137 kb on + strand, within BACOVA_03246at 336.138 kb on - strand, within BACOVA_03246at 336.175 kb on - strand, within BACOVA_03246at 336.177 kb on + strand, within BACOVA_03246at 336.187 kb on - strand, within BACOVA_03246at 336.198 kb on + strand, within BACOVA_03246at 336.232 kb on + strand, within BACOVA_03246at 336.331 kb on + strand, within BACOVA_03246at 336.332 kb on - strand, within BACOVA_03246at 336.340 kb on - strand, within BACOVA_03246at 336.434 kb on - strand, within BACOVA_03246at 336.491 kb on - strand, within BACOVA_03246at 336.510 kb on + strand, within BACOVA_03246at 336.520 kb on + strand, within BACOVA_03246at 336.521 kb on - strand, within BACOVA_03246at 336.521 kb on - strand, within BACOVA_03246at 336.549 kb on + strandat 336.569 kb on + strandat 336.570 kb on - strandat 336.571 kb on + strandat 336.572 kb on - strandat 336.572 kb on - strandat 336.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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334,379 - -0.3
334,384 - +0.6
334,401 + -0.5
334,402 - -0.9
334,408 - -2.7
334,439 - -0.9
334,497 - -0.7
334,516 + -0.1
334,517 - +0.2
334,637 + BACOVA_03242 0.25 -0.3
334,638 - BACOVA_03242 0.26 -0.9
334,641 + BACOVA_03242 0.26 +0.0
334,642 - BACOVA_03242 0.26 -0.5
334,703 + BACOVA_03242 0.39 -1.4
334,830 + BACOVA_03242 0.66 -0.6
334,869 - BACOVA_03242 0.74 -0.2
334,927 - BACOVA_03242 0.86 +0.3
334,931 - BACOVA_03242 0.87 -0.7
334,931 - BACOVA_03242 0.87 -0.1
334,982 - +1.0
334,985 + -0.2
334,986 - +0.1
335,028 + -1.7
335,061 - +0.7
335,063 + -1.8
335,064 - +1.6
335,098 + -0.7
335,098 + +0.2
335,098 + +0.2
335,105 - -0.8
335,109 - -0.6
335,162 + -0.3
335,163 - +1.3
335,164 + +0.1
335,193 + -2.7
335,193 + +0.7
335,194 - -1.4
335,244 - +1.3
335,279 - -0.5
335,288 - +0.1
335,293 + -0.5
335,294 - +1.1
335,294 - +0.3
335,298 - -2.6
335,300 + -0.0
335,310 + +0.7
335,314 - +0.5
335,314 - -0.2
335,314 - -0.3
335,320 - -0.4
335,321 + +0.5
335,321 + -0.2
335,326 - -0.4
335,330 + +0.6
335,330 + +1.9
335,330 + -0.4
335,330 + -0.1
335,330 + -1.4
335,330 + -0.0
335,331 - +0.3
335,430 + BACOVA_03243 0.39 +1.0
335,431 - BACOVA_03243 0.39 -3.0
335,437 + BACOVA_03243 0.42 -1.9
335,440 - BACOVA_03243 0.43 -0.4
335,464 - BACOVA_03243 0.52 -0.8
335,480 + BACOVA_03243 0.58 -0.8
335,480 + BACOVA_03243 0.58 -0.6
335,480 + BACOVA_03243 0.58 -0.3
335,518 + BACOVA_03243 0.72 +0.5
335,518 + BACOVA_03243 0.72 -0.3
335,518 + BACOVA_03243 0.72 +2.0
335,530 - BACOVA_03243 0.76 -1.0
335,537 + BACOVA_03243 0.79 -0.9
335,538 - BACOVA_03243 0.79 -0.3
335,567 - +0.3
335,589 - -1.4
335,598 + -0.7
335,598 + +0.4
335,607 - BACOVA_03244 0.13 -0.4
335,607 - BACOVA_03244 0.13 -0.8
335,610 - BACOVA_03244 0.16 -1.1
335,620 + BACOVA_03244 0.23 +0.5
335,621 - BACOVA_03244 0.24 +2.0
335,717 + +0.1
335,718 - +0.9
335,721 + -0.2
335,722 - -0.8
335,722 - -0.4
335,722 - +0.5
335,744 - +0.2
335,748 + -0.4
335,749 - +1.5
335,754 + +0.3
335,755 - +1.7
335,755 - -0.5
335,755 - +0.3
335,755 - -0.6
335,758 - -1.0
335,758 - -0.1
335,760 + -0.2
335,771 + BACOVA_03245 0.13 -2.0
335,771 + BACOVA_03245 0.13 -0.9
335,810 - BACOVA_03245 0.32 +1.3
335,840 + BACOVA_03245 0.47 +1.4
335,840 + BACOVA_03245 0.47 -0.2
335,842 + BACOVA_03245 0.48 -1.9
335,843 - BACOVA_03245 0.49 -0.2
335,843 - BACOVA_03245 0.49 -0.6
335,845 + BACOVA_03245 0.50 +2.7
335,845 + BACOVA_03245 0.50 -0.8
335,845 + BACOVA_03245 0.50 -0.7
335,845 + BACOVA_03245 0.50 +0.1
335,846 - BACOVA_03245 0.50 +1.3
335,846 - BACOVA_03245 0.50 -0.1
335,848 + BACOVA_03245 0.51 -0.9
335,853 + BACOVA_03245 0.53 -0.4
335,853 + BACOVA_03245 0.53 -0.8
335,853 + BACOVA_03245 0.53 +1.7
335,854 - BACOVA_03245 0.54 -1.4
335,854 - BACOVA_03245 0.54 -0.4
335,855 + BACOVA_03245 0.54 +0.6
335,855 + BACOVA_03245 0.54 -0.6
335,856 - BACOVA_03245 0.55 -0.3
335,889 + BACOVA_03245 0.71 +1.4
335,906 + BACOVA_03245 0.79 +1.3
335,907 - BACOVA_03245 0.80 +0.7
335,945 + -0.6
335,946 - +0.3
335,963 + +0.7
335,964 - -0.4
335,985 - +1.5
335,986 + -0.2
335,987 - +0.5
335,987 - +0.6
335,992 + +1.6
335,992 + -0.4
335,994 + -0.1
335,994 + -0.1
335,995 - -0.1
335,997 - -0.5
335,997 - -0.9
335,998 + -1.2
335,999 - +0.6
336,042 + -0.9
336,043 - BACOVA_03246 0.10 -0.2
336,099 + BACOVA_03246 0.19 +0.4
336,099 + BACOVA_03246 0.19 -0.3
336,121 + BACOVA_03246 0.23 +0.1
336,137 + BACOVA_03246 0.26 -0.6
336,138 - BACOVA_03246 0.26 +0.1
336,175 - BACOVA_03246 0.32 +0.2
336,177 + BACOVA_03246 0.32 +0.1
336,187 - BACOVA_03246 0.34 +0.7
336,198 + BACOVA_03246 0.36 -0.8
336,232 + BACOVA_03246 0.41 -1.0
336,331 + BACOVA_03246 0.58 -1.6
336,332 - BACOVA_03246 0.58 -0.5
336,340 - BACOVA_03246 0.59 +0.7
336,434 - BACOVA_03246 0.75 -0.4
336,491 - BACOVA_03246 0.85 +0.3
336,510 + BACOVA_03246 0.88 +1.1
336,520 + BACOVA_03246 0.90 -0.2
336,521 - BACOVA_03246 0.90 -0.3
336,521 - BACOVA_03246 0.90 +1.3
336,549 + +0.3
336,569 + +1.7
336,570 - -2.2
336,571 + -0.8
336,572 - +1.0
336,572 - -0.3
336,587 + -0.4

Or see this region's nucleotide sequence