Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03148

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03146 and BACOVA_03147 are separated by 13 nucleotidesBACOVA_03147 and BACOVA_03148 overlap by 11 nucleotidesBACOVA_03148 and BACOVA_03149 are separated by 114 nucleotidesBACOVA_03149 and BACOVA_03150 are separated by 54 nucleotides BACOVA_03146: BACOVA_03146 - hydrolase, P-loop family, at 236,209 to 236,622 _03146 BACOVA_03147: BACOVA_03147 - ABC 3 transport family protein, at 236,636 to 237,460 _03147 BACOVA_03148: BACOVA_03148 - hypothetical protein, at 237,450 to 237,893 _03148 BACOVA_03149: BACOVA_03149 - hypothetical protein, at 238,008 to 238,340 _03149 BACOVA_03150: BACOVA_03150 - leucine Rich Repeat protein, at 238,395 to 239,135 _03150 Position (kb) 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 236.625 kb on - strandat 236.632 kb on - strandat 236.635 kb on - strandat 236.638 kb on - strandat 236.638 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.703 kb on - strandat 236.748 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.795 kb on - strand, within BACOVA_03147at 236.812 kb on - strand, within BACOVA_03147at 236.926 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 236.984 kb on - strand, within BACOVA_03147at 237.212 kb on - strand, within BACOVA_03147at 237.359 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.361 kb on - strand, within BACOVA_03147at 237.428 kb on - strandat 237.428 kb on - strandat 237.428 kb on - strandat 237.435 kb on - strandat 237.438 kb on - strandat 237.472 kb on - strandat 237.596 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.635 kb on - strand, within BACOVA_03148at 237.686 kb on - strand, within BACOVA_03148at 237.691 kb on - strand, within BACOVA_03148at 237.877 kb on - strandat 237.900 kb on - strandat 237.902 kb on - strandat 237.938 kb on - strandat 237.938 kb on - strandat 237.957 kb on + strandat 237.990 kb on + strandat 237.991 kb on - strandat 237.993 kb on + strandat 237.994 kb on - strandat 238.003 kb on - strandat 238.022 kb on + strandat 238.022 kb on + strandat 238.023 kb on - strandat 238.023 kb on - strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.024 kb on + strandat 238.025 kb on - strandat 238.027 kb on + strandat 238.058 kb on - strand, within BACOVA_03149at 238.058 kb on - strand, within BACOVA_03149at 238.085 kb on + strand, within BACOVA_03149at 238.196 kb on - strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.219 kb on + strand, within BACOVA_03149at 238.220 kb on - strand, within BACOVA_03149at 238.250 kb on - strand, within BACOVA_03149at 238.282 kb on + strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.283 kb on - strand, within BACOVA_03149at 238.285 kb on - strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.286 kb on + strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.287 kb on - strand, within BACOVA_03149at 238.299 kb on - strand, within BACOVA_03149at 238.306 kb on + strand, within BACOVA_03149at 238.307 kb on - strandat 238.308 kb on + strandat 238.309 kb on - strandat 238.309 kb on - strandat 238.338 kb on + strandat 238.338 kb on + strandat 238.339 kb on - strandat 238.344 kb on - strandat 238.349 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.351 kb on + strandat 238.352 kb on - strandat 238.383 kb on + strandat 238.457 kb on + strandat 238.469 kb on + strand, within BACOVA_03150at 238.469 kb on + strand, within BACOVA_03150at 238.469 kb on + strand, within BACOVA_03150at 238.485 kb on - strand, within BACOVA_03150at 238.547 kb on + strand, within BACOVA_03150at 238.548 kb on - strand, within BACOVA_03150at 238.549 kb on + strand, within BACOVA_03150at 238.582 kb on + strand, within BACOVA_03150at 238.617 kb on + strand, within BACOVA_03150at 238.626 kb on + strand, within BACOVA_03150at 238.627 kb on - strand, within BACOVA_03150at 238.628 kb on + strand, within BACOVA_03150at 238.677 kb on - strand, within BACOVA_03150at 238.691 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.699 kb on + strand, within BACOVA_03150at 238.700 kb on - strand, within BACOVA_03150at 238.744 kb on + strand, within BACOVA_03150at 238.744 kb on + strand, within BACOVA_03150at 238.781 kb on + strand, within BACOVA_03150at 238.782 kb on - strand, within BACOVA_03150at 238.783 kb on + strand, within BACOVA_03150at 238.813 kb on + strand, within BACOVA_03150at 238.824 kb on + strand, within BACOVA_03150at 238.825 kb on - strand, within BACOVA_03150at 238.862 kb on + strand, within BACOVA_03150at 238.863 kb on - strand, within BACOVA_03150at 238.865 kb on + strand, within BACOVA_03150at 238.866 kb on - strand, within BACOVA_03150at 238.889 kb on + strand, within BACOVA_03150at 238.890 kb on - strand, within BACOVA_03150

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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236,625 - -0.7
236,632 - +0.3
236,635 - -1.8
236,638 - -0.7
236,638 - -0.9
236,703 - -0.4
236,703 - -2.3
236,703 - -1.3
236,748 - BACOVA_03147 0.14 -1.6
236,795 - BACOVA_03147 0.19 +1.3
236,795 - BACOVA_03147 0.19 -2.3
236,812 - BACOVA_03147 0.21 +0.8
236,926 - BACOVA_03147 0.35 +0.3
236,984 - BACOVA_03147 0.42 -0.3
236,984 - BACOVA_03147 0.42 -0.4
236,984 - BACOVA_03147 0.42 -1.4
237,212 - BACOVA_03147 0.70 -0.5
237,359 - BACOVA_03147 0.88 -0.3
237,361 - BACOVA_03147 0.88 -2.2
237,361 - BACOVA_03147 0.88 -1.0
237,361 - BACOVA_03147 0.88 +0.2
237,361 - BACOVA_03147 0.88 -0.2
237,361 - BACOVA_03147 0.88 +0.1
237,361 - BACOVA_03147 0.88 -1.5
237,361 - BACOVA_03147 0.88 -0.9
237,361 - BACOVA_03147 0.88 -0.4
237,428 - -0.6
237,428 - +1.5
237,428 - +0.2
237,435 - -0.9
237,438 - +0.1
237,472 - -0.9
237,596 - BACOVA_03148 0.33 -1.8
237,635 - BACOVA_03148 0.42 -0.3
237,635 - BACOVA_03148 0.42 -1.3
237,686 - BACOVA_03148 0.53 -1.6
237,691 - BACOVA_03148 0.54 -0.3
237,877 - -1.0
237,900 - -1.3
237,902 - -0.8
237,938 - +0.2
237,938 - -1.3
237,957 + +0.3
237,990 + -0.3
237,991 - +2.0
237,993 + +0.4
237,994 - -0.4
238,003 - -1.1
238,022 + -0.5
238,022 + -1.6
238,023 - +0.7
238,023 - +0.7
238,024 + -0.2
238,024 + -1.0
238,024 + -1.0
238,025 - -1.5
238,027 + -0.0
238,058 - BACOVA_03149 0.15 -0.9
238,058 - BACOVA_03149 0.15 -0.2
238,085 + BACOVA_03149 0.23 -1.2
238,196 - BACOVA_03149 0.56 -0.2
238,219 + BACOVA_03149 0.63 +0.9
238,219 + BACOVA_03149 0.63 +0.8
238,220 - BACOVA_03149 0.64 +1.3
238,250 - BACOVA_03149 0.73 +1.5
238,282 + BACOVA_03149 0.82 -0.3
238,283 - BACOVA_03149 0.83 -0.2
238,283 - BACOVA_03149 0.83 +0.7
238,283 - BACOVA_03149 0.83 -3.0
238,285 - BACOVA_03149 0.83 +1.3
238,286 + BACOVA_03149 0.83 +0.2
238,286 + BACOVA_03149 0.83 -1.3
238,286 + BACOVA_03149 0.83 -0.5
238,286 + BACOVA_03149 0.83 +1.8
238,286 + BACOVA_03149 0.83 +1.0
238,287 - BACOVA_03149 0.84 -0.6
238,287 - BACOVA_03149 0.84 -0.4
238,287 - BACOVA_03149 0.84 -0.0
238,287 - BACOVA_03149 0.84 +0.2
238,287 - BACOVA_03149 0.84 -0.5
238,287 - BACOVA_03149 0.84 +0.3
238,287 - BACOVA_03149 0.84 -2.1
238,299 - BACOVA_03149 0.87 +0.4
238,306 + BACOVA_03149 0.89 +0.3
238,307 - -0.5
238,308 + +0.1
238,309 - +2.9
238,309 - +0.6
238,338 + +0.6
238,338 + +0.0
238,339 - +0.2
238,344 - -0.2
238,349 + -0.7
238,351 + -0.4
238,351 + -0.6
238,351 + +1.3
238,352 - -1.3
238,383 + +1.0
238,457 + +0.3
238,469 + BACOVA_03150 0.10 +2.1
238,469 + BACOVA_03150 0.10 -0.9
238,469 + BACOVA_03150 0.10 +0.7
238,485 - BACOVA_03150 0.12 -0.6
238,547 + BACOVA_03150 0.21 +1.2
238,548 - BACOVA_03150 0.21 -0.3
238,549 + BACOVA_03150 0.21 +0.6
238,582 + BACOVA_03150 0.25 -1.5
238,617 + BACOVA_03150 0.30 -1.0
238,626 + BACOVA_03150 0.31 -0.0
238,627 - BACOVA_03150 0.31 +0.5
238,628 + BACOVA_03150 0.31 -0.3
238,677 - BACOVA_03150 0.38 +0.1
238,691 + BACOVA_03150 0.40 -1.7
238,699 + BACOVA_03150 0.41 +1.1
238,699 + BACOVA_03150 0.41 -1.9
238,699 + BACOVA_03150 0.41 -1.2
238,700 - BACOVA_03150 0.41 +0.2
238,744 + BACOVA_03150 0.47 +1.3
238,744 + BACOVA_03150 0.47 -0.5
238,781 + BACOVA_03150 0.52 -0.4
238,782 - BACOVA_03150 0.52 +0.3
238,783 + BACOVA_03150 0.52 -0.1
238,813 + BACOVA_03150 0.56 +1.3
238,824 + BACOVA_03150 0.58 -0.1
238,825 - BACOVA_03150 0.58 +0.4
238,862 + BACOVA_03150 0.63 +0.8
238,863 - BACOVA_03150 0.63 -0.5
238,865 + BACOVA_03150 0.63 -0.2
238,866 - BACOVA_03150 0.64 -0.3
238,889 + BACOVA_03150 0.67 -0.5
238,890 - BACOVA_03150 0.67 +0.5

Or see this region's nucleotide sequence