Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01843

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01841 and BACOVA_01842 overlap by 4 nucleotidesBACOVA_01842 and BACOVA_01843 overlap by 4 nucleotidesBACOVA_01843 and BACOVA_01845 are separated by 3 nucleotidesBACOVA_01845 and BACOVA_01844 overlap by 11 nucleotides BACOVA_01841: BACOVA_01841 - peptidase, M23 family, at 34,824 to 36,125 _01841 BACOVA_01842: BACOVA_01842 - hypothetical protein, at 36,122 to 36,700 _01842 BACOVA_01843: BACOVA_01843 - tetratricopeptide repeat protein, at 36,697 to 38,490 _01843 BACOVA_01845: BACOVA_01845 - dUTP diphosphatase, at 38,494 to 39,033 _01845 BACOVA_01844: BACOVA_01844 - putative dGTPase, at 39,023 to 40,396 _01844 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -2 -1 0 1at 35.735 kb on + strand, within BACOVA_01841at 35.762 kb on + strand, within BACOVA_01841at 35.771 kb on - strand, within BACOVA_01841at 35.795 kb on - strand, within BACOVA_01841at 35.900 kb on + strand, within BACOVA_01841at 35.900 kb on + strand, within BACOVA_01841at 35.903 kb on - strand, within BACOVA_01841at 35.975 kb on + strand, within BACOVA_01841at 35.987 kb on + strand, within BACOVA_01841at 36.029 kb on + strandat 36.099 kb on + strandat 36.100 kb on - strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.129 kb on - strandat 36.147 kb on - strandat 36.877 kb on - strand, within BACOVA_01843at 36.883 kb on - strand, within BACOVA_01843at 37.029 kb on - strand, within BACOVA_01843at 37.029 kb on - strand, within BACOVA_01843at 37.032 kb on - strand, within BACOVA_01843at 37.069 kb on - strand, within BACOVA_01843at 37.069 kb on - strand, within BACOVA_01843at 37.128 kb on - strand, within BACOVA_01843at 37.128 kb on - strand, within BACOVA_01843at 37.187 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.189 kb on - strand, within BACOVA_01843at 37.455 kb on - strand, within BACOVA_01843at 37.464 kb on - strand, within BACOVA_01843at 37.674 kb on - strand, within BACOVA_01843at 37.677 kb on - strand, within BACOVA_01843at 37.727 kb on - strand, within BACOVA_01843at 37.737 kb on - strand, within BACOVA_01843at 37.838 kb on - strand, within BACOVA_01843at 37.858 kb on - strand, within BACOVA_01843at 37.878 kb on - strand, within BACOVA_01843at 37.962 kb on - strand, within BACOVA_01843at 37.962 kb on - strand, within BACOVA_01843at 37.962 kb on - strand, within BACOVA_01843at 38.106 kb on - strand, within BACOVA_01843at 38.106 kb on - strand, within BACOVA_01843at 38.112 kb on - strand, within BACOVA_01843at 38.185 kb on - strand, within BACOVA_01843at 38.187 kb on - strand, within BACOVA_01843at 38.300 kb on - strand, within BACOVA_01843at 38.300 kb on - strand, within BACOVA_01843at 38.310 kb on - strand, within BACOVA_01843at 38.316 kb on - strandat 38.320 kb on - strandat 38.395 kb on - strandat 39.003 kb on + strandat 39.004 kb on - strandat 39.035 kb on - strandat 39.046 kb on + strandat 39.047 kb on - strandat 39.070 kb on - strandat 39.072 kb on + strandat 39.146 kb on + strandat 39.147 kb on - strandat 39.183 kb on + strand, within BACOVA_01844at 39.202 kb on - strand, within BACOVA_01844at 39.228 kb on + strand, within BACOVA_01844at 39.241 kb on + strand, within BACOVA_01844at 39.356 kb on - strand, within BACOVA_01844at 39.431 kb on - strand, within BACOVA_01844

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Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
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35,735 + BACOVA_01841 0.70 -1.0
35,762 + BACOVA_01841 0.72 -1.0
35,771 - BACOVA_01841 0.73 -0.2
35,795 - BACOVA_01841 0.75 +1.1
35,900 + BACOVA_01841 0.83 -0.8
35,900 + BACOVA_01841 0.83 -1.0
35,903 - BACOVA_01841 0.83 -0.4
35,975 + BACOVA_01841 0.88 -0.7
35,987 + BACOVA_01841 0.89 -1.1
36,029 + -1.4
36,099 + +0.3
36,100 - +0.9
36,129 - +0.1
36,129 - -0.4
36,129 - +1.6
36,147 - -0.9
36,877 - BACOVA_01843 0.10 -0.8
36,883 - BACOVA_01843 0.10 +0.1
37,029 - BACOVA_01843 0.19 -0.3
37,029 - BACOVA_01843 0.19 -0.5
37,032 - BACOVA_01843 0.19 -0.2
37,069 - BACOVA_01843 0.21 -0.2
37,069 - BACOVA_01843 0.21 -0.6
37,128 - BACOVA_01843 0.24 -0.3
37,128 - BACOVA_01843 0.24 +0.4
37,187 - BACOVA_01843 0.27 +0.5
37,189 - BACOVA_01843 0.27 -0.6
37,189 - BACOVA_01843 0.27 -0.1
37,189 - BACOVA_01843 0.27 -0.8
37,189 - BACOVA_01843 0.27 -0.8
37,189 - BACOVA_01843 0.27 -0.0
37,189 - BACOVA_01843 0.27 -0.8
37,455 - BACOVA_01843 0.42 -2.1
37,464 - BACOVA_01843 0.43 -1.4
37,674 - BACOVA_01843 0.54 -1.2
37,677 - BACOVA_01843 0.55 -0.8
37,727 - BACOVA_01843 0.57 -0.2
37,737 - BACOVA_01843 0.58 -2.0
37,838 - BACOVA_01843 0.64 -0.8
37,858 - BACOVA_01843 0.65 -1.1
37,878 - BACOVA_01843 0.66 +0.4
37,962 - BACOVA_01843 0.71 +0.9
37,962 - BACOVA_01843 0.71 -0.2
37,962 - BACOVA_01843 0.71 +0.4
38,106 - BACOVA_01843 0.79 -0.1
38,106 - BACOVA_01843 0.79 +0.6
38,112 - BACOVA_01843 0.79 -0.6
38,185 - BACOVA_01843 0.83 -0.3
38,187 - BACOVA_01843 0.83 +0.4
38,300 - BACOVA_01843 0.89 +0.4
38,300 - BACOVA_01843 0.89 -0.8
38,310 - BACOVA_01843 0.90 -2.7
38,316 - +0.0
38,320 - -1.7
38,395 - -0.7
39,003 + -2.7
39,004 - +0.2
39,035 - -1.0
39,046 + +0.8
39,047 - -2.2
39,070 - +0.7
39,072 + -1.9
39,146 + +0.4
39,147 - -0.3
39,183 + BACOVA_01844 0.12 +1.4
39,202 - BACOVA_01844 0.13 +0.6
39,228 + BACOVA_01844 0.15 +0.6
39,241 + BACOVA_01844 0.16 -0.6
39,356 - BACOVA_01844 0.24 +0.4
39,431 - BACOVA_01844 0.30 +0.2

Or see this region's nucleotide sequence