Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01051

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01049 and BACOVA_01050 are separated by 17 nucleotidesBACOVA_01050 and BACOVA_01051 are separated by 73 nucleotidesBACOVA_01051 and BACOVA_01052 are separated by 187 nucleotides BACOVA_01049: BACOVA_01049 - hypothetical protein, at 257,275 to 257,574 _01049 BACOVA_01050: BACOVA_01050 - site-specific recombinase, phage integrase family/ribosomal subunit interface protein, at 257,592 to 258,473 _01050 BACOVA_01051: BACOVA_01051 - 30S ribosomal protein S21, at 258,547 to 258,738 _01051 BACOVA_01052: BACOVA_01052 - hypothetical protein, at 258,926 to 260,707 _01052 Position (kb) 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.575 kb on - strandat 257.578 kb on + strandat 257.616 kb on - strandat 257.616 kb on - strandat 257.745 kb on - strand, within BACOVA_01050at 257.814 kb on - strand, within BACOVA_01050at 258.855 kb on + strandat 258.867 kb on + strandat 258.899 kb on + strandat 258.899 kb on + strandat 258.899 kb on + strandat 258.899 kb on + strandat 258.900 kb on - strandat 258.900 kb on - strandat 258.900 kb on - strandat 258.912 kb on + strandat 258.912 kb on + strandat 258.913 kb on - strandat 258.915 kb on + strandat 258.920 kb on + strandat 258.920 kb on + strandat 258.921 kb on - strandat 258.925 kb on + strandat 258.939 kb on + strandat 258.939 kb on + strandat 258.940 kb on - strandat 259.001 kb on - strandat 259.001 kb on - strandat 259.025 kb on - strandat 259.076 kb on - strandat 259.112 kb on - strand, within BACOVA_01052at 259.140 kb on - strand, within BACOVA_01052at 259.154 kb on - strand, within BACOVA_01052at 259.180 kb on + strand, within BACOVA_01052at 259.185 kb on + strand, within BACOVA_01052at 259.187 kb on + strand, within BACOVA_01052at 259.187 kb on + strand, within BACOVA_01052at 259.187 kb on + strand, within BACOVA_01052at 259.188 kb on - strand, within BACOVA_01052at 259.188 kb on - strand, within BACOVA_01052at 259.190 kb on - strand, within BACOVA_01052at 259.217 kb on - strand, within BACOVA_01052at 259.219 kb on + strand, within BACOVA_01052at 259.242 kb on + strand, within BACOVA_01052at 259.243 kb on - strand, within BACOVA_01052at 259.260 kb on + strand, within BACOVA_01052at 259.260 kb on + strand, within BACOVA_01052at 259.261 kb on - strand, within BACOVA_01052at 259.332 kb on + strand, within BACOVA_01052at 259.333 kb on - strand, within BACOVA_01052at 259.344 kb on + strand, within BACOVA_01052at 259.345 kb on - strand, within BACOVA_01052at 259.364 kb on - strand, within BACOVA_01052at 259.408 kb on + strand, within BACOVA_01052at 259.412 kb on + strand, within BACOVA_01052at 259.413 kb on - strand, within BACOVA_01052at 259.413 kb on - strand, within BACOVA_01052at 259.424 kb on + strand, within BACOVA_01052at 259.424 kb on + strand, within BACOVA_01052at 259.425 kb on - strand, within BACOVA_01052at 259.491 kb on - strand, within BACOVA_01052at 259.497 kb on + strand, within BACOVA_01052at 259.498 kb on - strand, within BACOVA_01052at 259.498 kb on - strand, within BACOVA_01052at 259.554 kb on + strand, within BACOVA_01052at 259.555 kb on - strand, within BACOVA_01052at 259.573 kb on - strand, within BACOVA_01052at 259.575 kb on + strand, within BACOVA_01052at 259.576 kb on - strand, within BACOVA_01052at 259.576 kb on - strand, within BACOVA_01052at 259.588 kb on - strand, within BACOVA_01052at 259.616 kb on - strand, within BACOVA_01052at 259.644 kb on - strand, within BACOVA_01052at 259.654 kb on + strand, within BACOVA_01052at 259.656 kb on + strand, within BACOVA_01052at 259.681 kb on + strand, within BACOVA_01052at 259.685 kb on + strand, within BACOVA_01052at 259.685 kb on + strand, within BACOVA_01052at 259.695 kb on + strand, within BACOVA_01052

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
remove
257,575 - -1.0
257,578 + -0.0
257,616 - -1.2
257,616 - +0.5
257,745 - BACOVA_01050 0.17 -3.1
257,814 - BACOVA_01050 0.25 -0.0
258,855 + +0.1
258,867 + +0.2
258,899 + -1.2
258,899 + -0.9
258,899 + +0.1
258,899 + +0.9
258,900 - +0.6
258,900 - +1.5
258,900 - -0.6
258,912 + -0.3
258,912 + -0.9
258,913 - +0.4
258,915 + -0.7
258,920 + +1.3
258,920 + +0.6
258,921 - -0.1
258,925 + +0.8
258,939 + +2.1
258,939 + -1.0
258,940 - -0.8
259,001 - +0.1
259,001 - +2.5
259,025 - +0.8
259,076 - -0.4
259,112 - BACOVA_01052 0.10 -0.7
259,140 - BACOVA_01052 0.12 -0.1
259,154 - BACOVA_01052 0.13 +0.3
259,180 + BACOVA_01052 0.14 -0.2
259,185 + BACOVA_01052 0.15 -0.2
259,187 + BACOVA_01052 0.15 -1.2
259,187 + BACOVA_01052 0.15 +0.7
259,187 + BACOVA_01052 0.15 -0.9
259,188 - BACOVA_01052 0.15 +0.1
259,188 - BACOVA_01052 0.15 -1.9
259,190 - BACOVA_01052 0.15 -0.3
259,217 - BACOVA_01052 0.16 -0.0
259,219 + BACOVA_01052 0.16 +0.2
259,242 + BACOVA_01052 0.18 -2.1
259,243 - BACOVA_01052 0.18 +0.0
259,260 + BACOVA_01052 0.19 -0.9
259,260 + BACOVA_01052 0.19 -1.1
259,261 - BACOVA_01052 0.19 -0.8
259,332 + BACOVA_01052 0.23 +1.1
259,333 - BACOVA_01052 0.23 +0.2
259,344 + BACOVA_01052 0.23 -1.1
259,345 - BACOVA_01052 0.24 +0.8
259,364 - BACOVA_01052 0.25 -0.8
259,408 + BACOVA_01052 0.27 +1.4
259,412 + BACOVA_01052 0.27 -1.9
259,413 - BACOVA_01052 0.27 +1.1
259,413 - BACOVA_01052 0.27 +0.0
259,424 + BACOVA_01052 0.28 -1.1
259,424 + BACOVA_01052 0.28 -0.6
259,425 - BACOVA_01052 0.28 +0.8
259,491 - BACOVA_01052 0.32 +1.4
259,497 + BACOVA_01052 0.32 -0.4
259,498 - BACOVA_01052 0.32 -0.2
259,498 - BACOVA_01052 0.32 +1.3
259,554 + BACOVA_01052 0.35 -0.8
259,555 - BACOVA_01052 0.35 +0.2
259,573 - BACOVA_01052 0.36 -0.5
259,575 + BACOVA_01052 0.36 +0.5
259,576 - BACOVA_01052 0.36 -1.0
259,576 - BACOVA_01052 0.36 -0.2
259,588 - BACOVA_01052 0.37 -1.4
259,616 - BACOVA_01052 0.39 +1.1
259,644 - BACOVA_01052 0.40 +0.5
259,654 + BACOVA_01052 0.41 +0.3
259,656 + BACOVA_01052 0.41 +0.7
259,681 + BACOVA_01052 0.42 -1.0
259,685 + BACOVA_01052 0.43 -0.7
259,685 + BACOVA_01052 0.43 +0.4
259,695 + BACOVA_01052 0.43 -0.0

Or see this region's nucleotide sequence