Experiment: beta-Cyclodextrin 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00520 and BACOVA_00521 overlap by 26 nucleotides BACOVA_00521 and BACOVA_00522 are separated by 6 nucleotides BACOVA_00522 and BACOVA_00523 are separated by 275 nucleotides BACOVA_00523 and BACOVA_00524 are separated by 65 nucleotides BACOVA_00524 and BACOVA_00525 are separated by 28 nucleotides
BACOVA_00520: BACOVA_00520 - ATPase family associated with various cellular activities (AAA), at 18,752 to 20,326
_00520
BACOVA_00521: BACOVA_00521 - hypothetical protein, at 20,301 to 21,728
_00521
BACOVA_00522: BACOVA_00522 - hypothetical protein, at 21,735 to 21,881
_00522
BACOVA_00523: BACOVA_00523 - tRNA-Ser, at 22,157 to 22,243
_00523
BACOVA_00524: BACOVA_00524 - tRNA-Glu, at 22,309 to 22,380
_00524
BACOVA_00525: BACOVA_00525 - hypothetical protein, at 22,409 to 23,230
_00525
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.330 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.372 kb on - strand, within BACOVA_00520 at 19.373 kb on + strand, within BACOVA_00520 at 19.383 kb on + strand, within BACOVA_00520 at 19.404 kb on + strand, within BACOVA_00520 at 19.405 kb on - strand, within BACOVA_00520 at 19.408 kb on + strand, within BACOVA_00520 at 19.409 kb on - strand, within BACOVA_00520 at 19.418 kb on - strand, within BACOVA_00520 at 19.442 kb on - strand, within BACOVA_00520 at 19.464 kb on - strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.465 kb on + strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.466 kb on - strand, within BACOVA_00520 at 19.500 kb on - strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.501 kb on + strand, within BACOVA_00520 at 19.503 kb on + strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520 at 19.504 kb on - strand, within BACOVA_00520 at 19.681 kb on + strand, within BACOVA_00520 at 19.690 kb on - strand, within BACOVA_00520 at 19.723 kb on + strand, within BACOVA_00520 at 19.723 kb on + strand, within BACOVA_00520 at 19.724 kb on - strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.768 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.791 kb on + strand, within BACOVA_00520 at 19.792 kb on - strand, within BACOVA_00520 at 19.796 kb on - strand, within BACOVA_00520 at 19.796 kb on - strand, within BACOVA_00520 at 19.803 kb on - strand, within BACOVA_00520 at 19.813 kb on - strand, within BACOVA_00520 at 19.985 kb on + strand, within BACOVA_00520 at 19.986 kb on - strand, within BACOVA_00520 at 20.033 kb on + strand, within BACOVA_00520 at 20.041 kb on - strand, within BACOVA_00520 at 20.043 kb on + strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.044 kb on - strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.048 kb on + strand, within BACOVA_00520 at 20.122 kb on - strand, within BACOVA_00520 at 20.122 kb on - strand, within BACOVA_00520 at 20.127 kb on + strand, within BACOVA_00520 at 20.145 kb on + strand, within BACOVA_00520 at 20.180 kb on + strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.182 kb on + strand at 20.182 kb on + strand at 20.202 kb on + strand at 20.239 kb on - strand at 20.254 kb on + strand at 20.255 kb on - strand at 20.260 kb on - strand at 20.260 kb on - strand at 20.260 kb on - strand at 20.371 kb on + strand at 20.377 kb on - strand at 20.398 kb on + strand at 20.398 kb on + strand at 20.512 kb on - strand, within BACOVA_00521 at 20.512 kb on - strand, within BACOVA_00521 at 20.619 kb on + strand, within BACOVA_00521 at 20.619 kb on + strand, within BACOVA_00521 at 20.641 kb on + strand, within BACOVA_00521 at 20.702 kb on + strand, within BACOVA_00521 at 20.703 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.745 kb on - strand, within BACOVA_00521 at 20.774 kb on + strand, within BACOVA_00521 at 20.846 kb on + strand, within BACOVA_00521 at 20.946 kb on - strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.993 kb on + strand, within BACOVA_00521 at 20.994 kb on - strand, within BACOVA_00521 at 20.996 kb on - strand, within BACOVA_00521 at 21.050 kb on + strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.076 kb on - strand, within BACOVA_00521 at 21.134 kb on - strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.254 kb on + strand, within BACOVA_00521 at 21.255 kb on - strand, within BACOVA_00521 at 21.292 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.319 kb on + strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.320 kb on - strand, within BACOVA_00521 at 21.336 kb on + strand, within BACOVA_00521 at 21.419 kb on - strand, within BACOVA_00521 at 21.446 kb on + strand, within BACOVA_00521 at 21.496 kb on - strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.497 kb on + strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.498 kb on - strand, within BACOVA_00521 at 21.553 kb on + strand, within BACOVA_00521 at 21.554 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.569 kb on - strand, within BACOVA_00521 at 21.600 kb on + strand at 21.600 kb on + strand at 21.601 kb on - strand at 21.601 kb on - strand at 21.614 kb on - strand at 21.639 kb on + strand at 21.650 kb on - strand at 21.851 kb on + strand, within BACOVA_00522 at 21.855 kb on + strand, within BACOVA_00522 at 21.888 kb on + strand at 21.917 kb on - strand at 21.934 kb on + strand at 21.943 kb on + strand at 22.043 kb on - strand at 22.050 kb on + strand at 22.051 kb on - strand at 22.257 kb on + strand at 22.258 kb on - strand at 22.277 kb on - strand at 22.292 kb on + strand at 22.298 kb on + strand at 22.299 kb on - strand at 22.352 kb on + strand, within BACOVA_00524 at 22.353 kb on - strand, within BACOVA_00524 at 22.380 kb on - strand at 22.406 kb on + strand at 22.410 kb on + strand at 22.410 kb on + strand at 22.431 kb on + strand at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.518 kb on + strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.519 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.552 kb on - strand, within BACOVA_00525 at 22.555 kb on + strand, within BACOVA_00525 at 22.556 kb on - strand, within BACOVA_00525 at 22.645 kb on + strand, within BACOVA_00525 at 22.646 kb on - strand, within BACOVA_00525 at 22.673 kb on + strand, within BACOVA_00525 at 22.683 kb on + strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.684 kb on - strand, within BACOVA_00525 at 22.687 kb on + strand, within BACOVA_00525 at 22.688 kb on - strand, within BACOVA_00525 at 22.715 kb on + strand, within BACOVA_00525
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C) remove 19,330 - BACOVA_00520 0.37 +0.1 19,372 - BACOVA_00520 0.39 -0.2 19,372 - BACOVA_00520 0.39 -1.3 19,373 + BACOVA_00520 0.39 +0.6 19,383 + BACOVA_00520 0.40 -1.7 19,404 + BACOVA_00520 0.41 -0.2 19,405 - BACOVA_00520 0.41 +0.3 19,408 + BACOVA_00520 0.42 -0.2 19,409 - BACOVA_00520 0.42 -0.1 19,418 - BACOVA_00520 0.42 -0.5 19,442 - BACOVA_00520 0.44 +0.6 19,464 - BACOVA_00520 0.45 +0.4 19,465 + BACOVA_00520 0.45 +1.6 19,465 + BACOVA_00520 0.45 +0.6 19,465 + BACOVA_00520 0.45 +1.2 19,465 + BACOVA_00520 0.45 +0.8 19,466 - BACOVA_00520 0.45 +0.6 19,466 - BACOVA_00520 0.45 +0.6 19,500 - BACOVA_00520 0.47 -0.7 19,501 + BACOVA_00520 0.48 +0.7 19,501 + BACOVA_00520 0.48 -0.8 19,503 + BACOVA_00520 0.48 +0.5 19,504 - BACOVA_00520 0.48 -0.5 19,504 - BACOVA_00520 0.48 -1.2 19,681 + BACOVA_00520 0.59 -0.3 19,690 - BACOVA_00520 0.60 +0.2 19,723 + BACOVA_00520 0.62 +0.1 19,723 + BACOVA_00520 0.62 -0.6 19,724 - BACOVA_00520 0.62 +0.6 19,768 + BACOVA_00520 0.65 -0.2 19,768 + BACOVA_00520 0.65 -0.3 19,768 + BACOVA_00520 0.65 -1.3 19,791 + BACOVA_00520 0.66 -0.3 19,791 + BACOVA_00520 0.66 -0.9 19,791 + BACOVA_00520 0.66 +0.2 19,792 - BACOVA_00520 0.66 +0.3 19,796 - BACOVA_00520 0.66 +0.1 19,796 - BACOVA_00520 0.66 -0.3 19,803 - BACOVA_00520 0.67 +0.5 19,813 - BACOVA_00520 0.67 -0.3 19,985 + BACOVA_00520 0.78 -0.9 19,986 - BACOVA_00520 0.78 +1.0 20,033 + BACOVA_00520 0.81 +0.7 20,041 - BACOVA_00520 0.82 -0.7 20,043 + BACOVA_00520 0.82 +1.6 20,044 - BACOVA_00520 0.82 -0.0 20,044 - BACOVA_00520 0.82 -0.4 20,044 - BACOVA_00520 0.82 +2.3 20,048 + BACOVA_00520 0.82 +1.3 20,048 + BACOVA_00520 0.82 -1.0 20,048 + BACOVA_00520 0.82 -0.3 20,122 - BACOVA_00520 0.87 +1.2 20,122 - BACOVA_00520 0.87 -0.3 20,127 + BACOVA_00520 0.87 -0.1 20,145 + BACOVA_00520 0.88 +0.1 20,180 + -0.8 20,181 - +0.7 20,181 - -1.4 20,181 - -0.8 20,182 + -1.2 20,182 + -0.1 20,202 + -1.3 20,239 - +0.9 20,254 + +0.1 20,255 - -1.1 20,260 - +1.0 20,260 - +1.7 20,260 - +0.2 20,371 + -1.0 20,377 - +0.3 20,398 + -0.4 20,398 + +1.5 20,512 - BACOVA_00521 0.15 +0.5 20,512 - BACOVA_00521 0.15 -0.4 20,619 + BACOVA_00521 0.22 +1.0 20,619 + BACOVA_00521 0.22 -0.5 20,641 + BACOVA_00521 0.24 +1.8 20,702 + BACOVA_00521 0.28 -0.0 20,703 - BACOVA_00521 0.28 -0.6 20,745 - BACOVA_00521 0.31 +1.7 20,745 - BACOVA_00521 0.31 +1.5 20,774 + BACOVA_00521 0.33 -0.5 20,846 + BACOVA_00521 0.38 -1.3 20,946 - BACOVA_00521 0.45 -3.0 20,993 + BACOVA_00521 0.48 -1.3 20,993 + BACOVA_00521 0.48 +0.8 20,994 - BACOVA_00521 0.49 -0.1 20,996 - BACOVA_00521 0.49 +0.3 21,050 + BACOVA_00521 0.52 -0.7 21,076 - BACOVA_00521 0.54 +1.3 21,076 - BACOVA_00521 0.54 +2.3 21,076 - BACOVA_00521 0.54 -0.8 21,134 - BACOVA_00521 0.58 -1.9 21,254 + BACOVA_00521 0.67 +1.8 21,254 + BACOVA_00521 0.67 -0.3 21,255 - BACOVA_00521 0.67 +1.5 21,292 + BACOVA_00521 0.69 -0.2 21,319 + BACOVA_00521 0.71 +1.1 21,319 + BACOVA_00521 0.71 +0.5 21,320 - BACOVA_00521 0.71 -1.0 21,320 - BACOVA_00521 0.71 -0.8 21,336 + BACOVA_00521 0.72 +0.6 21,419 - BACOVA_00521 0.78 +1.5 21,446 + BACOVA_00521 0.80 +1.3 21,496 - BACOVA_00521 0.84 +0.2 21,497 + BACOVA_00521 0.84 -0.6 21,497 + BACOVA_00521 0.84 -0.0 21,497 + BACOVA_00521 0.84 -0.6 21,498 - BACOVA_00521 0.84 -0.3 21,498 - BACOVA_00521 0.84 -0.6 21,498 - BACOVA_00521 0.84 +2.1 21,553 + BACOVA_00521 0.88 +2.3 21,554 - BACOVA_00521 0.88 -0.2 21,569 - BACOVA_00521 0.89 +1.9 21,569 - BACOVA_00521 0.89 -0.2 21,600 + +0.5 21,600 + +0.1 21,601 - +0.3 21,601 - +1.4 21,614 - +2.3 21,639 + -0.3 21,650 - -1.4 21,851 + BACOVA_00522 0.79 +0.2 21,855 + BACOVA_00522 0.82 -0.3 21,888 + -0.1 21,917 - +0.5 21,934 + +0.4 21,943 + -1.5 22,043 - -0.3 22,050 + +1.5 22,051 - +0.6 22,257 + -0.4 22,258 - -0.7 22,277 - -1.2 22,292 + +1.6 22,298 + +1.1 22,299 - +0.1 22,352 + BACOVA_00524 0.60 +1.6 22,353 - BACOVA_00524 0.61 +1.2 22,380 - +1.3 22,406 + -0.8 22,410 + -0.7 22,410 + -1.6 22,431 + -1.2 22,518 + BACOVA_00525 0.13 -0.5 22,518 + BACOVA_00525 0.13 -0.5 22,518 + BACOVA_00525 0.13 -1.6 22,519 - BACOVA_00525 0.13 +1.6 22,519 - BACOVA_00525 0.13 +2.1 22,552 - BACOVA_00525 0.17 +1.0 22,552 - BACOVA_00525 0.17 -0.3 22,555 + BACOVA_00525 0.18 -0.0 22,556 - BACOVA_00525 0.18 +0.6 22,645 + BACOVA_00525 0.29 +0.7 22,646 - BACOVA_00525 0.29 -1.0 22,673 + BACOVA_00525 0.32 +1.1 22,683 + BACOVA_00525 0.33 +0.4 22,684 - BACOVA_00525 0.33 -0.1 22,684 - BACOVA_00525 0.33 -0.9 22,687 + BACOVA_00525 0.34 -0.8 22,688 - BACOVA_00525 0.34 -1.3 22,715 + BACOVA_00525 0.37 +0.5
Or see this region's nucleotide sequence