Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00252

Experiment: beta-Cyclodextrin 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00250 and BACOVA_00251 are separated by 109 nucleotidesBACOVA_00251 and BACOVA_00252 are separated by 151 nucleotidesBACOVA_00252 and BACOVA_00253 are separated by 53 nucleotidesBACOVA_00253 and BACOVA_00254 are separated by 9 nucleotides BACOVA_00250: BACOVA_00250 - glycosyl hydrolase family 2, sugar binding domain protein, at 33,245 to 35,605 _00250 BACOVA_00251: BACOVA_00251 - hypothetical protein, at 35,715 to 35,816 _00251 BACOVA_00252: BACOVA_00252 - hypothetical protein, at 35,968 to 36,168 _00252 BACOVA_00253: BACOVA_00253 - hypothetical protein, at 36,222 to 36,485 _00253 BACOVA_00254: BACOVA_00254 - hypothetical protein, at 36,495 to 36,836 _00254 Position (kb) 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 35.057 kb on - strand, within BACOVA_00250at 35.086 kb on + strand, within BACOVA_00250at 35.087 kb on - strand, within BACOVA_00250at 35.087 kb on - strand, within BACOVA_00250at 35.087 kb on - strand, within BACOVA_00250at 35.129 kb on - strand, within BACOVA_00250at 35.173 kb on + strand, within BACOVA_00250at 35.173 kb on + strand, within BACOVA_00250at 35.173 kb on + strand, within BACOVA_00250at 35.174 kb on - strand, within BACOVA_00250at 35.174 kb on - strand, within BACOVA_00250at 35.178 kb on + strand, within BACOVA_00250at 35.178 kb on + strand, within BACOVA_00250at 35.179 kb on - strand, within BACOVA_00250at 35.179 kb on - strand, within BACOVA_00250at 35.187 kb on + strand, within BACOVA_00250at 35.188 kb on - strand, within BACOVA_00250at 35.188 kb on - strand, within BACOVA_00250at 35.188 kb on - strand, within BACOVA_00250at 35.193 kb on - strand, within BACOVA_00250at 35.193 kb on - strand, within BACOVA_00250at 35.195 kb on - strand, within BACOVA_00250at 35.195 kb on - strand, within BACOVA_00250at 35.211 kb on + strand, within BACOVA_00250at 35.222 kb on + strand, within BACOVA_00250at 35.258 kb on - strand, within BACOVA_00250at 35.397 kb on + strandat 35.397 kb on + strandat 35.398 kb on - strandat 35.477 kb on - strandat 35.481 kb on + strandat 35.481 kb on + strandat 35.482 kb on - strandat 35.486 kb on - strandat 35.489 kb on + strandat 35.536 kb on + strandat 35.536 kb on + strandat 35.537 kb on - strandat 35.541 kb on + strandat 35.541 kb on + strandat 35.542 kb on - strandat 35.542 kb on - strandat 35.542 kb on - strandat 35.567 kb on - strandat 35.567 kb on - strandat 35.572 kb on + strandat 35.594 kb on - strandat 35.596 kb on + strandat 35.603 kb on + strandat 35.631 kb on + strandat 35.631 kb on + strandat 35.631 kb on + strandat 35.661 kb on - strandat 35.664 kb on + strandat 35.665 kb on - strandat 35.711 kb on + strandat 35.716 kb on + strandat 35.717 kb on - strandat 35.721 kb on - strandat 35.762 kb on + strand, within BACOVA_00251at 35.762 kb on + strand, within BACOVA_00251at 35.763 kb on - strand, within BACOVA_00251at 35.817 kb on - strandat 35.895 kb on - strandat 35.924 kb on + strandat 35.974 kb on + strandat 36.038 kb on + strand, within BACOVA_00252at 36.045 kb on + strand, within BACOVA_00252at 36.046 kb on - strand, within BACOVA_00252at 36.048 kb on + strand, within BACOVA_00252at 36.049 kb on - strand, within BACOVA_00252at 36.059 kb on + strand, within BACOVA_00252at 36.060 kb on - strand, within BACOVA_00252at 36.065 kb on - strand, within BACOVA_00252at 36.079 kb on + strand, within BACOVA_00252at 36.080 kb on - strand, within BACOVA_00252at 36.087 kb on + strand, within BACOVA_00252at 36.088 kb on - strand, within BACOVA_00252at 36.118 kb on + strand, within BACOVA_00252at 36.119 kb on - strand, within BACOVA_00252at 36.131 kb on - strand, within BACOVA_00252at 36.133 kb on + strand, within BACOVA_00252at 36.133 kb on + strand, within BACOVA_00252at 36.138 kb on + strand, within BACOVA_00252at 36.154 kb on - strandat 36.182 kb on - strandat 36.184 kb on + strandat 36.185 kb on - strandat 36.190 kb on - strandat 36.197 kb on - strandat 36.205 kb on - strandat 36.215 kb on + strandat 36.228 kb on - strandat 36.241 kb on - strandat 36.245 kb on + strandat 36.246 kb on - strandat 36.249 kb on - strand, within BACOVA_00253at 36.251 kb on + strand, within BACOVA_00253at 36.251 kb on + strand, within BACOVA_00253at 36.251 kb on + strand, within BACOVA_00253at 36.251 kb on + strand, within BACOVA_00253at 36.252 kb on - strand, within BACOVA_00253at 36.252 kb on - strand, within BACOVA_00253at 36.252 kb on - strand, within BACOVA_00253at 36.280 kb on - strand, within BACOVA_00253at 36.281 kb on + strand, within BACOVA_00253at 36.352 kb on + strand, within BACOVA_00253at 36.352 kb on + strand, within BACOVA_00253at 36.452 kb on + strand, within BACOVA_00253at 36.453 kb on - strand, within BACOVA_00253at 36.466 kb on + strandat 36.466 kb on + strandat 36.467 kb on - strandat 36.483 kb on + strandat 36.494 kb on - strandat 36.564 kb on - strand, within BACOVA_00254at 36.571 kb on + strand, within BACOVA_00254at 36.575 kb on + strand, within BACOVA_00254at 36.576 kb on - strand, within BACOVA_00254at 36.576 kb on - strand, within BACOVA_00254at 36.576 kb on - strand, within BACOVA_00254at 36.589 kb on + strand, within BACOVA_00254at 36.590 kb on - strand, within BACOVA_00254at 36.605 kb on + strand, within BACOVA_00254at 36.606 kb on - strand, within BACOVA_00254at 36.606 kb on - strand, within BACOVA_00254at 36.608 kb on + strand, within BACOVA_00254at 36.628 kb on + strand, within BACOVA_00254at 36.629 kb on - strand, within BACOVA_00254at 36.629 kb on - strand, within BACOVA_00254at 36.657 kb on - strand, within BACOVA_00254at 36.671 kb on + strand, within BACOVA_00254at 36.689 kb on + strand, within BACOVA_00254at 36.689 kb on + strand, within BACOVA_00254at 36.690 kb on - strand, within BACOVA_00254at 36.692 kb on + strand, within BACOVA_00254at 36.693 kb on - strand, within BACOVA_00254at 36.698 kb on - strand, within BACOVA_00254at 36.698 kb on - strand, within BACOVA_00254at 36.725 kb on + strand, within BACOVA_00254at 36.726 kb on - strand, within BACOVA_00254at 36.726 kb on - strand, within BACOVA_00254at 36.790 kb on + strand, within BACOVA_00254at 36.802 kb on - strandat 36.805 kb on + strandat 36.806 kb on - strandat 36.815 kb on - strandat 36.820 kb on - strandat 36.820 kb on - strandat 36.855 kb on - strandat 36.858 kb on + strandat 36.865 kb on + strandat 36.880 kb on + strandat 36.893 kb on + strandat 36.904 kb on - strandat 36.915 kb on + strandat 36.915 kb on + strandat 36.918 kb on - strandat 36.918 kb on - strandat 36.925 kb on + strandat 37.057 kb on - strandat 37.078 kb on + strandat 37.098 kb on + strandat 37.098 kb on + strandat 37.098 kb on + strandat 37.099 kb on - strandat 37.104 kb on + strandat 37.145 kb on + strandat 37.146 kb on - strandat 37.153 kb on + strandat 37.154 kb on - strandat 37.165 kb on + strandat 37.166 kb on - strandat 37.166 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/mL (C)
remove
35,057 - BACOVA_00250 0.77 -1.3
35,086 + BACOVA_00250 0.78 +2.5
35,087 - BACOVA_00250 0.78 -0.0
35,087 - BACOVA_00250 0.78 -0.9
35,087 - BACOVA_00250 0.78 +0.9
35,129 - BACOVA_00250 0.80 +0.2
35,173 + BACOVA_00250 0.82 +0.8
35,173 + BACOVA_00250 0.82 -0.2
35,173 + BACOVA_00250 0.82 +1.0
35,174 - BACOVA_00250 0.82 +1.2
35,174 - BACOVA_00250 0.82 -0.2
35,178 + BACOVA_00250 0.82 -1.8
35,178 + BACOVA_00250 0.82 +0.2
35,179 - BACOVA_00250 0.82 +0.4
35,179 - BACOVA_00250 0.82 +0.7
35,187 + BACOVA_00250 0.82 +1.0
35,188 - BACOVA_00250 0.82 +0.4
35,188 - BACOVA_00250 0.82 -0.1
35,188 - BACOVA_00250 0.82 +2.6
35,193 - BACOVA_00250 0.83 +0.9
35,193 - BACOVA_00250 0.83 -0.6
35,195 - BACOVA_00250 0.83 -0.7
35,195 - BACOVA_00250 0.83 -0.2
35,211 + BACOVA_00250 0.83 -0.6
35,222 + BACOVA_00250 0.84 -0.2
35,258 - BACOVA_00250 0.85 -1.3
35,397 + +1.1
35,397 + -0.1
35,398 - -2.2
35,477 - +0.7
35,481 + +0.1
35,481 + +0.6
35,482 - +0.8
35,486 - +1.0
35,489 + +0.4
35,536 + -0.1
35,536 + +0.1
35,537 - +0.3
35,541 + -1.7
35,541 + +0.2
35,542 - +0.4
35,542 - -0.5
35,542 - +1.0
35,567 - -1.4
35,567 - -0.2
35,572 + -0.6
35,594 - +2.6
35,596 + -0.4
35,603 + -1.1
35,631 + -0.7
35,631 + -0.3
35,631 + -0.6
35,661 - -0.6
35,664 + -1.8
35,665 - -0.2
35,711 + +0.8
35,716 + -0.0
35,717 - -1.2
35,721 - -2.0
35,762 + BACOVA_00251 0.46 -0.4
35,762 + BACOVA_00251 0.46 -0.0
35,763 - BACOVA_00251 0.47 -0.3
35,817 - -0.6
35,895 - -0.1
35,924 + -0.2
35,974 + -0.1
36,038 + BACOVA_00252 0.35 +1.0
36,045 + BACOVA_00252 0.38 -1.3
36,046 - BACOVA_00252 0.39 +0.9
36,048 + BACOVA_00252 0.40 -0.4
36,049 - BACOVA_00252 0.40 -0.4
36,059 + BACOVA_00252 0.45 +0.6
36,060 - BACOVA_00252 0.46 -1.3
36,065 - BACOVA_00252 0.48 -0.3
36,079 + BACOVA_00252 0.55 +0.4
36,080 - BACOVA_00252 0.56 +1.4
36,087 + BACOVA_00252 0.59 -1.8
36,088 - BACOVA_00252 0.60 -0.6
36,118 + BACOVA_00252 0.75 +1.0
36,119 - BACOVA_00252 0.75 +0.4
36,131 - BACOVA_00252 0.81 -0.2
36,133 + BACOVA_00252 0.82 -0.3
36,133 + BACOVA_00252 0.82 -0.5
36,138 + BACOVA_00252 0.85 -1.5
36,154 - -0.0
36,182 - -0.0
36,184 + -0.7
36,185 - +0.7
36,190 - +0.6
36,197 - +0.6
36,205 - -1.1
36,215 + +1.7
36,228 - +0.7
36,241 - +0.1
36,245 + +0.2
36,246 - -0.1
36,249 - BACOVA_00253 0.10 -0.9
36,251 + BACOVA_00253 0.11 +0.2
36,251 + BACOVA_00253 0.11 +1.4
36,251 + BACOVA_00253 0.11 -1.2
36,251 + BACOVA_00253 0.11 -1.7
36,252 - BACOVA_00253 0.11 -0.6
36,252 - BACOVA_00253 0.11 -1.2
36,252 - BACOVA_00253 0.11 -0.5
36,280 - BACOVA_00253 0.22 -0.5
36,281 + BACOVA_00253 0.22 +1.4
36,352 + BACOVA_00253 0.49 -1.2
36,352 + BACOVA_00253 0.49 +0.4
36,452 + BACOVA_00253 0.87 -1.4
36,453 - BACOVA_00253 0.88 +0.1
36,466 + -0.9
36,466 + -0.4
36,467 - +0.4
36,483 + +0.5
36,494 - -1.7
36,564 - BACOVA_00254 0.20 +0.1
36,571 + BACOVA_00254 0.22 -0.3
36,575 + BACOVA_00254 0.23 -1.3
36,576 - BACOVA_00254 0.24 -0.2
36,576 - BACOVA_00254 0.24 +1.2
36,576 - BACOVA_00254 0.24 -0.3
36,589 + BACOVA_00254 0.27 -1.2
36,590 - BACOVA_00254 0.28 -0.4
36,605 + BACOVA_00254 0.32 -1.5
36,606 - BACOVA_00254 0.32 +0.5
36,606 - BACOVA_00254 0.32 +0.5
36,608 + BACOVA_00254 0.33 +0.7
36,628 + BACOVA_00254 0.39 -0.5
36,629 - BACOVA_00254 0.39 -0.5
36,629 - BACOVA_00254 0.39 -0.8
36,657 - BACOVA_00254 0.47 -1.0
36,671 + BACOVA_00254 0.51 +0.5
36,689 + BACOVA_00254 0.57 -0.3
36,689 + BACOVA_00254 0.57 -0.1
36,690 - BACOVA_00254 0.57 -0.1
36,692 + BACOVA_00254 0.58 +0.1
36,693 - BACOVA_00254 0.58 +0.7
36,698 - BACOVA_00254 0.59 -1.5
36,698 - BACOVA_00254 0.59 -0.4
36,725 + BACOVA_00254 0.67 +1.2
36,726 - BACOVA_00254 0.68 -1.8
36,726 - BACOVA_00254 0.68 -0.9
36,790 + BACOVA_00254 0.86 +0.2
36,802 - -0.4
36,805 + -1.3
36,806 - +0.3
36,815 - +0.8
36,820 - -0.6
36,820 - +0.7
36,855 - +0.8
36,858 + +2.1
36,865 + +1.1
36,880 + -0.8
36,893 + +0.4
36,904 - +0.1
36,915 + -0.5
36,915 + -0.1
36,918 - +1.8
36,918 - +0.4
36,925 + -0.8
37,057 - -1.1
37,078 + +0.4
37,098 + -0.6
37,098 + -0.4
37,098 + -1.4
37,099 - -0.6
37,104 + +0.4
37,145 + -1.5
37,146 - -0.7
37,153 + -0.9
37,154 - -0.3
37,165 + -0.5
37,166 - -0.8
37,166 - -0.8

Or see this region's nucleotide sequence