Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02015

Experiment: L-tyrosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02013 and MPMX26_02014 are separated by 152 nucleotidesMPMX26_02014 and MPMX26_02015 are separated by 182 nucleotidesMPMX26_02015 and MPMX26_02016 are separated by 49 nucleotidesMPMX26_02016 and MPMX26_02017 are separated by 122 nucleotides MPMX26_02013: MPMX26_02013 - Alkyl hydroperoxide reductase subunit F, at 2,077,406 to 2,078,971 _02013 MPMX26_02014: MPMX26_02014 - hypothetical protein, at 2,079,124 to 2,079,483 _02014 MPMX26_02015: MPMX26_02015 - hypothetical protein, at 2,079,666 to 2,080,049 _02015 MPMX26_02016: MPMX26_02016 - hypothetical protein, at 2,080,099 to 2,080,716 _02016 MPMX26_02017: MPMX26_02017 - Peroxide stress resistance protein YaaA, at 2,080,839 to 2,081,618 _02017 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -1 0 1at 2078.674 kb on + strand, within MPMX26_02013at 2078.708 kb on + strand, within MPMX26_02013at 2078.708 kb on + strand, within MPMX26_02013at 2079.451 kb on + strandat 2079.704 kb on + strandat 2079.711 kb on + strand, within MPMX26_02015at 2079.762 kb on + strand, within MPMX26_02015at 2079.773 kb on + strand, within MPMX26_02015at 2079.773 kb on + strand, within MPMX26_02015at 2079.773 kb on + strand, within MPMX26_02015at 2079.773 kb on + strand, within MPMX26_02015at 2079.780 kb on + strand, within MPMX26_02015at 2079.852 kb on + strand, within MPMX26_02015at 2079.866 kb on + strand, within MPMX26_02015at 2079.866 kb on + strand, within MPMX26_02015at 2079.870 kb on + strand, within MPMX26_02015at 2079.876 kb on + strand, within MPMX26_02015at 2079.876 kb on + strand, within MPMX26_02015at 2079.935 kb on + strand, within MPMX26_02015at 2079.935 kb on + strand, within MPMX26_02015at 2079.935 kb on + strand, within MPMX26_02015at 2079.943 kb on + strand, within MPMX26_02015at 2079.943 kb on + strand, within MPMX26_02015at 2079.992 kb on + strand, within MPMX26_02015at 2079.994 kb on + strand, within MPMX26_02015at 2079.996 kb on + strand, within MPMX26_02015at 2079.996 kb on + strand, within MPMX26_02015at 2079.996 kb on + strand, within MPMX26_02015at 2080.016 kb on + strandat 2080.028 kb on + strandat 2080.028 kb on + strandat 2080.028 kb on + strandat 2080.028 kb on + strandat 2080.028 kb on + strandat 2080.224 kb on - strand, within MPMX26_02016

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
remove
2,078,674 + MPMX26_02013 0.81 +0.1
2,078,708 + MPMX26_02013 0.83 +1.1
2,078,708 + MPMX26_02013 0.83 +0.8
2,079,451 + +1.5
2,079,704 + +0.3
2,079,711 + MPMX26_02015 0.12 +0.8
2,079,762 + MPMX26_02015 0.25 +1.5
2,079,773 + MPMX26_02015 0.28 +0.2
2,079,773 + MPMX26_02015 0.28 +0.4
2,079,773 + MPMX26_02015 0.28 +0.3
2,079,773 + MPMX26_02015 0.28 -0.5
2,079,780 + MPMX26_02015 0.30 +0.5
2,079,852 + MPMX26_02015 0.48 +0.2
2,079,866 + MPMX26_02015 0.52 +0.7
2,079,866 + MPMX26_02015 0.52 +0.3
2,079,870 + MPMX26_02015 0.53 +0.2
2,079,876 + MPMX26_02015 0.55 +0.4
2,079,876 + MPMX26_02015 0.55 -0.0
2,079,935 + MPMX26_02015 0.70 +0.5
2,079,935 + MPMX26_02015 0.70 +0.5
2,079,935 + MPMX26_02015 0.70 +0.7
2,079,943 + MPMX26_02015 0.72 -0.4
2,079,943 + MPMX26_02015 0.72 -0.9
2,079,992 + MPMX26_02015 0.85 +0.2
2,079,994 + MPMX26_02015 0.85 +0.8
2,079,996 + MPMX26_02015 0.86 +0.2
2,079,996 + MPMX26_02015 0.86 -0.8
2,079,996 + MPMX26_02015 0.86 -0.1
2,080,016 + +0.6
2,080,028 + +0.3
2,080,028 + +0.1
2,080,028 + +0.4
2,080,028 + +0.7
2,080,028 + +0.6
2,080,224 - MPMX26_02016 0.20 +0.8

Or see this region's nucleotide sequence