Strain Fitness in Escherichia coli ECRC101 around MCAODC_27155

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntallR and allA are separated by 77 nucleotidesallA and allS are separated by 229 nucleotidesallS and mnmH are separated by 68 nucleotides MCAODC_27145: allR - HTH-type transcriptional repressor AllR, at 2,154,382 to 2,155,197 allR MCAODC_27150: allA - ureidoglycolate lyase, at 2,155,275 to 2,155,757 allA MCAODC_27155: allS - HTH-type transcriptional activator AllS, at 2,155,987 to 2,156,913 allS MCAODC_27160: mnmH - tRNA 2-selenouridine(34) synthase MnmH, at 2,156,982 to 2,158,076 mnmH Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2155.126 kb on + strandat 2155.127 kb on - strandat 2155.197 kb on + strandat 2155.201 kb on + strandat 2155.201 kb on + strandat 2155.201 kb on + strandat 2155.201 kb on + strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.202 kb on - strandat 2155.207 kb on - strandat 2155.207 kb on - strandat 2155.217 kb on + strandat 2155.218 kb on - strandat 2155.229 kb on + strandat 2155.245 kb on - strandat 2155.245 kb on - strandat 2155.245 kb on - strandat 2155.255 kb on - strandat 2155.255 kb on - strandat 2155.255 kb on - strandat 2155.304 kb on + strandat 2155.406 kb on - strand, within allAat 2155.406 kb on - strand, within allAat 2155.430 kb on + strand, within allAat 2155.430 kb on + strand, within allAat 2155.431 kb on - strand, within allAat 2155.433 kb on + strand, within allAat 2155.434 kb on - strand, within allAat 2155.434 kb on - strand, within allAat 2155.434 kb on - strand, within allAat 2155.473 kb on + strand, within allAat 2155.474 kb on - strand, within allAat 2155.527 kb on - strand, within allAat 2155.604 kb on + strand, within allAat 2155.667 kb on + strand, within allAat 2155.702 kb on - strand, within allAat 2155.711 kb on + strandat 2155.743 kb on + strandat 2155.743 kb on + strandat 2155.776 kb on + strandat 2155.777 kb on - strandat 2155.777 kb on - strandat 2155.777 kb on - strandat 2155.830 kb on + strandat 2156.063 kb on + strandat 2156.063 kb on + strandat 2156.068 kb on - strandat 2156.089 kb on + strand, within allSat 2156.089 kb on + strand, within allSat 2156.149 kb on - strand, within allSat 2156.153 kb on + strand, within allSat 2156.153 kb on + strand, within allSat 2156.153 kb on + strand, within allSat 2156.181 kb on - strand, within allSat 2156.181 kb on - strand, within allSat 2156.220 kb on + strand, within allSat 2156.272 kb on - strand, within allSat 2156.272 kb on - strand, within allSat 2156.293 kb on + strand, within allSat 2156.293 kb on + strand, within allSat 2156.294 kb on - strand, within allSat 2156.377 kb on + strand, within allSat 2156.377 kb on + strand, within allSat 2156.377 kb on + strand, within allSat 2156.378 kb on - strand, within allSat 2156.378 kb on - strand, within allSat 2156.378 kb on - strand, within allSat 2156.404 kb on + strand, within allSat 2156.404 kb on + strand, within allSat 2156.404 kb on + strand, within allSat 2156.457 kb on + strand, within allSat 2156.457 kb on + strand, within allSat 2156.477 kb on + strand, within allSat 2156.477 kb on + strand, within allSat 2156.477 kb on + strand, within allSat 2156.646 kb on + strand, within allSat 2156.839 kb on - strandat 2156.854 kb on - strandat 2156.948 kb on - strandat 2156.978 kb on - strandat 2156.978 kb on - strandat 2156.978 kb on - strandat 2156.981 kb on + strandat 2156.981 kb on + strandat 2156.981 kb on + strandat 2156.981 kb on + strandat 2156.981 kb on + strandat 2157.144 kb on + strand, within mnmHat 2157.144 kb on + strand, within mnmHat 2157.144 kb on + strand, within mnmHat 2157.144 kb on + strand, within mnmHat 2157.145 kb on - strand, within mnmHat 2157.145 kb on - strand, within mnmHat 2157.185 kb on + strand, within mnmHat 2157.186 kb on - strand, within mnmHat 2157.186 kb on - strand, within mnmHat 2157.260 kb on + strand, within mnmHat 2157.260 kb on + strand, within mnmHat 2157.260 kb on + strand, within mnmHat 2157.260 kb on + strand, within mnmHat 2157.296 kb on + strand, within mnmHat 2157.296 kb on + strand, within mnmHat 2157.296 kb on + strand, within mnmHat 2157.297 kb on - strand, within mnmHat 2157.297 kb on - strand, within mnmHat 2157.354 kb on + strand, within mnmHat 2157.355 kb on - strand, within mnmHat 2157.356 kb on + strand, within mnmHat 2157.356 kb on + strand, within mnmHat 2157.356 kb on + strand, within mnmHat 2157.357 kb on - strand, within mnmHat 2157.389 kb on + strand, within mnmHat 2157.443 kb on + strand, within mnmHat 2157.529 kb on + strand, within mnmHat 2157.529 kb on + strand, within mnmHat 2157.529 kb on + strand, within mnmHat 2157.529 kb on + strand, within mnmHat 2157.707 kb on - strand, within mnmHat 2157.762 kb on - strand, within mnmHat 2157.813 kb on + strand, within mnmHat 2157.823 kb on - strand, within mnmHat 2157.848 kb on + strand, within mnmHat 2157.873 kb on + strand, within mnmHat 2157.875 kb on + strand, within mnmHat 2157.876 kb on - strand, within mnmHat 2157.876 kb on - strand, within mnmHat 2157.876 kb on - strand, within mnmH

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,155,126 + +0.8
2,155,127 - -1.1
2,155,197 + -0.7
2,155,201 + -0.6
2,155,201 + -1.0
2,155,201 + +0.5
2,155,201 + -0.8
2,155,202 - +1.1
2,155,202 - +0.8
2,155,202 - +3.4
2,155,202 - -2.1
2,155,202 - +0.2
2,155,202 - -0.7
2,155,202 - +0.1
2,155,207 - -1.5
2,155,207 - -0.7
2,155,217 + +0.8
2,155,218 - -1.9
2,155,229 + +0.2
2,155,245 - -0.3
2,155,245 - +0.8
2,155,245 - -0.1
2,155,255 - +1.8
2,155,255 - +0.5
2,155,255 - +2.4
2,155,304 + -1.4
2,155,406 - allA MCAODC_27150 0.27 +0.2
2,155,406 - allA MCAODC_27150 0.27 -0.2
2,155,430 + allA MCAODC_27150 0.32 +0.5
2,155,430 + allA MCAODC_27150 0.32 +0.2
2,155,431 - allA MCAODC_27150 0.32 -0.3
2,155,433 + allA MCAODC_27150 0.33 +0.2
2,155,434 - allA MCAODC_27150 0.33 +1.2
2,155,434 - allA MCAODC_27150 0.33 +0.9
2,155,434 - allA MCAODC_27150 0.33 -2.0
2,155,473 + allA MCAODC_27150 0.41 -0.2
2,155,474 - allA MCAODC_27150 0.41 +0.1
2,155,527 - allA MCAODC_27150 0.52 -0.2
2,155,604 + allA MCAODC_27150 0.68 +0.5
2,155,667 + allA MCAODC_27150 0.81 +0.4
2,155,702 - allA MCAODC_27150 0.88 -0.1
2,155,711 + -1.6
2,155,743 + +0.5
2,155,743 + -0.4
2,155,776 + -0.4
2,155,777 - +0.8
2,155,777 - -0.8
2,155,777 - -2.9
2,155,830 + +0.8
2,156,063 + -1.2
2,156,063 + -2.4
2,156,068 - -1.9
2,156,089 + allS MCAODC_27155 0.11 -0.9
2,156,089 + allS MCAODC_27155 0.11 +0.2
2,156,149 - allS MCAODC_27155 0.17 +0.0
2,156,153 + allS MCAODC_27155 0.18 +1.8
2,156,153 + allS MCAODC_27155 0.18 -0.2
2,156,153 + allS MCAODC_27155 0.18 +2.7
2,156,181 - allS MCAODC_27155 0.21 -0.2
2,156,181 - allS MCAODC_27155 0.21 -1.7
2,156,220 + allS MCAODC_27155 0.25 -1.1
2,156,272 - allS MCAODC_27155 0.31 -0.4
2,156,272 - allS MCAODC_27155 0.31 -1.9
2,156,293 + allS MCAODC_27155 0.33 -1.2
2,156,293 + allS MCAODC_27155 0.33 +0.2
2,156,294 - allS MCAODC_27155 0.33 -0.1
2,156,377 + allS MCAODC_27155 0.42 +0.5
2,156,377 + allS MCAODC_27155 0.42 +0.5
2,156,377 + allS MCAODC_27155 0.42 +0.2
2,156,378 - allS MCAODC_27155 0.42 +1.8
2,156,378 - allS MCAODC_27155 0.42 +1.5
2,156,378 - allS MCAODC_27155 0.42 -0.8
2,156,404 + allS MCAODC_27155 0.45 -0.7
2,156,404 + allS MCAODC_27155 0.45 +0.2
2,156,404 + allS MCAODC_27155 0.45 +1.8
2,156,457 + allS MCAODC_27155 0.51 -2.5
2,156,457 + allS MCAODC_27155 0.51 +0.1
2,156,477 + allS MCAODC_27155 0.53 +0.7
2,156,477 + allS MCAODC_27155 0.53 +0.2
2,156,477 + allS MCAODC_27155 0.53 +2.2
2,156,646 + allS MCAODC_27155 0.71 -1.0
2,156,839 - +1.0
2,156,854 - -0.3
2,156,948 - -0.0
2,156,978 - +0.8
2,156,978 - -0.9
2,156,978 - -2.4
2,156,981 + +1.7
2,156,981 + -0.4
2,156,981 + -0.5
2,156,981 + +1.4
2,156,981 + +0.0
2,157,144 + mnmH MCAODC_27160 0.15 +0.2
2,157,144 + mnmH MCAODC_27160 0.15 -0.2
2,157,144 + mnmH MCAODC_27160 0.15 -0.4
2,157,144 + mnmH MCAODC_27160 0.15 -1.0
2,157,145 - mnmH MCAODC_27160 0.15 +0.4
2,157,145 - mnmH MCAODC_27160 0.15 -3.4
2,157,185 + mnmH MCAODC_27160 0.19 +0.4
2,157,186 - mnmH MCAODC_27160 0.19 -0.5
2,157,186 - mnmH MCAODC_27160 0.19 -1.3
2,157,260 + mnmH MCAODC_27160 0.25 -0.3
2,157,260 + mnmH MCAODC_27160 0.25 -1.5
2,157,260 + mnmH MCAODC_27160 0.25 +1.4
2,157,260 + mnmH MCAODC_27160 0.25 +1.2
2,157,296 + mnmH MCAODC_27160 0.29 +1.6
2,157,296 + mnmH MCAODC_27160 0.29 +0.2
2,157,296 + mnmH MCAODC_27160 0.29 -0.0
2,157,297 - mnmH MCAODC_27160 0.29 -1.6
2,157,297 - mnmH MCAODC_27160 0.29 +0.8
2,157,354 + mnmH MCAODC_27160 0.34 +2.1
2,157,355 - mnmH MCAODC_27160 0.34 -0.8
2,157,356 + mnmH MCAODC_27160 0.34 +1.4
2,157,356 + mnmH MCAODC_27160 0.34 -0.1
2,157,356 + mnmH MCAODC_27160 0.34 +0.8
2,157,357 - mnmH MCAODC_27160 0.34 +0.8
2,157,389 + mnmH MCAODC_27160 0.37 -1.3
2,157,443 + mnmH MCAODC_27160 0.42 +1.0
2,157,529 + mnmH MCAODC_27160 0.50 +0.6
2,157,529 + mnmH MCAODC_27160 0.50 -0.5
2,157,529 + mnmH MCAODC_27160 0.50 -0.5
2,157,529 + mnmH MCAODC_27160 0.50 -0.2
2,157,707 - mnmH MCAODC_27160 0.66 +0.4
2,157,762 - mnmH MCAODC_27160 0.71 +0.2
2,157,813 + mnmH MCAODC_27160 0.76 +1.8
2,157,823 - mnmH MCAODC_27160 0.77 -0.0
2,157,848 + mnmH MCAODC_27160 0.79 -1.9
2,157,873 + mnmH MCAODC_27160 0.81 +0.2
2,157,875 + mnmH MCAODC_27160 0.82 +1.0
2,157,876 - mnmH MCAODC_27160 0.82 +1.8
2,157,876 - mnmH MCAODC_27160 0.82 +0.1
2,157,876 - mnmH MCAODC_27160 0.82 +0.8

Or see this region's nucleotide sequence