Strain Fitness in Escherichia coli ECRC101 around MCAODC_19380

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyecA and xerD are separated by 356 nucleotidesxerD and MCAODC_19385 are separated by 5 nucleotidesMCAODC_19385 and MCAODC_19390 are separated by 29 nucleotides MCAODC_19375: yecA - UPF0149 family protein YecA, at 721,373 to 722,038 yecA MCAODC_19380: xerD - integrase, at 722,395 to 723,396 xerD MCAODC_19385: MCAODC_19385 - DUF2511 domain-containing protein, at 723,402 to 723,749 _19385 MCAODC_19390: MCAODC_19390 - Putative transmembrane protein, at 723,779 to 724,429 _19390 Position (kb) 722 723 724Strain fitness (log2 ratio) -1 0 1 2at 721.536 kb on - strand, within yecAat 721.595 kb on - strand, within yecAat 721.678 kb on - strand, within yecAat 721.855 kb on - strand, within yecAat 721.932 kb on - strand, within yecAat 722.074 kb on + strandat 722.074 kb on + strandat 722.075 kb on - strandat 722.079 kb on + strandat 722.079 kb on + strandat 722.080 kb on - strandat 722.080 kb on - strandat 722.080 kb on - strandat 722.103 kb on - strandat 722.352 kb on + strandat 722.371 kb on - strandat 722.371 kb on - strandat 722.438 kb on - strandat 722.470 kb on - strandat 722.470 kb on - strandat 722.488 kb on - strandat 722.561 kb on - strand, within xerDat 722.573 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.631 kb on - strand, within xerDat 722.879 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.990 kb on - strand, within xerDat 722.994 kb on - strand, within xerDat 723.081 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.188 kb on + strand, within xerDat 723.189 kb on - strand, within xerDat 723.189 kb on - strand, within xerDat 723.261 kb on + strand, within xerDat 723.284 kb on + strand, within xerDat 723.285 kb on - strand, within xerDat 723.370 kb on - strandat 723.407 kb on + strandat 723.407 kb on + strandat 723.476 kb on + strand, within MCAODC_19385at 723.477 kb on - strand, within MCAODC_19385at 723.501 kb on - strand, within MCAODC_19385at 723.505 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.562 kb on - strand, within MCAODC_19385at 723.570 kb on - strand, within MCAODC_19385at 723.675 kb on - strand, within MCAODC_19385at 723.869 kb on + strand, within MCAODC_19390at 724.062 kb on - strand, within MCAODC_19390at 724.074 kb on - strand, within MCAODC_19390at 724.103 kb on - strand, within MCAODC_19390at 724.145 kb on - strand, within MCAODC_19390at 724.163 kb on - strand, within MCAODC_19390at 724.211 kb on - strand, within MCAODC_19390at 724.243 kb on + strand, within MCAODC_19390at 724.337 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390at 724.351 kb on - strand, within MCAODC_19390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
721,536 - yecA MCAODC_19375 0.24 -0.1
721,595 - yecA MCAODC_19375 0.33 -0.2
721,678 - yecA MCAODC_19375 0.46 -0.3
721,855 - yecA MCAODC_19375 0.72 +2.6
721,932 - yecA MCAODC_19375 0.84 +1.0
722,074 + -0.0
722,074 + +0.6
722,075 - -0.3
722,079 + +2.7
722,079 + +1.7
722,080 - +1.1
722,080 - +0.3
722,080 - -1.3
722,103 - -0.5
722,352 + -0.2
722,371 - +0.1
722,371 - -0.9
722,438 - -0.6
722,470 - -1.1
722,470 - +1.7
722,488 - +1.7
722,561 - xerD MCAODC_19380 0.17 +2.1
722,573 - xerD MCAODC_19380 0.18 +1.7
722,631 - xerD MCAODC_19380 0.24 +0.3
722,631 - xerD MCAODC_19380 0.24 -0.4
722,631 - xerD MCAODC_19380 0.24 +0.6
722,631 - xerD MCAODC_19380 0.24 -1.3
722,879 - xerD MCAODC_19380 0.48 +1.7
722,990 - xerD MCAODC_19380 0.59 +0.3
722,990 - xerD MCAODC_19380 0.59 -0.3
722,990 - xerD MCAODC_19380 0.59 -0.3
722,994 - xerD MCAODC_19380 0.60 +0.2
723,081 + xerD MCAODC_19380 0.68 +0.7
723,188 + xerD MCAODC_19380 0.79 -0.5
723,188 + xerD MCAODC_19380 0.79 +1.4
723,189 - xerD MCAODC_19380 0.79 +0.1
723,189 - xerD MCAODC_19380 0.79 +0.4
723,261 + xerD MCAODC_19380 0.86 +0.2
723,284 + xerD MCAODC_19380 0.89 -0.0
723,285 - xerD MCAODC_19380 0.89 +0.1
723,370 - +0.1
723,407 + +0.2
723,407 + +0.7
723,476 + MCAODC_19385 0.21 +0.8
723,477 - MCAODC_19385 0.22 -0.5
723,501 - MCAODC_19385 0.28 -0.6
723,505 - MCAODC_19385 0.30 -0.6
723,562 - MCAODC_19385 0.46 +0.5
723,562 - MCAODC_19385 0.46 +2.3
723,570 - MCAODC_19385 0.48 -0.4
723,675 - MCAODC_19385 0.78 +1.4
723,869 + MCAODC_19390 0.14 +0.7
724,062 - MCAODC_19390 0.43 +0.0
724,074 - MCAODC_19390 0.45 +0.1
724,103 - MCAODC_19390 0.50 +0.1
724,145 - MCAODC_19390 0.56 +0.3
724,163 - MCAODC_19390 0.59 +0.5
724,211 - MCAODC_19390 0.66 +1.3
724,243 + MCAODC_19390 0.71 +1.3
724,337 - MCAODC_19390 0.86 +0.4
724,351 - MCAODC_19390 0.88 +1.3
724,351 - MCAODC_19390 0.88 +1.7

Or see this region's nucleotide sequence