Strain Fitness in Escherichia coli ECRC101 around MCAODC_18215

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntuhpC and ydiB are separated by 11 nucleotidesydiB and aroD are separated by 30 nucleotidesaroD and ydiF are separated by 144 nucleotides MCAODC_18205: uhpC - MFS transporter, at 501,493 to 502,758 uhpC MCAODC_18210: ydiB - quinate/shikimate dehydrogenase, at 502,770 to 503,636 ydiB MCAODC_18215: aroD - 3-dehydroquinate dehydratase, at 503,667 to 504,425 aroD MCAODC_18220: ydiF - Acetate CoA-transferase YdiF, at 504,570 to 506,165 ydiF Position (kb) 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2 3at 502.743 kb on + strandat 502.743 kb on + strandat 502.880 kb on + strand, within ydiBat 502.966 kb on + strand, within ydiBat 502.998 kb on + strand, within ydiBat 503.080 kb on - strand, within ydiBat 503.082 kb on - strand, within ydiBat 503.222 kb on + strand, within ydiBat 503.469 kb on + strand, within ydiBat 503.469 kb on + strand, within ydiBat 503.469 kb on + strand, within ydiBat 503.491 kb on + strand, within ydiBat 503.491 kb on + strand, within ydiBat 503.604 kb on + strandat 503.605 kb on - strandat 503.955 kb on + strand, within aroDat 504.250 kb on - strand, within aroDat 504.319 kb on + strand, within aroDat 504.319 kb on + strand, within aroDat 505.155 kb on + strand, within ydiFat 505.220 kb on + strand, within ydiFat 505.345 kb on + strand, within ydiFat 505.373 kb on + strand, within ydiFat 505.373 kb on + strand, within ydiF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
502,743 + +1.6
502,743 + -1.3
502,880 + ydiB MCAODC_18210 0.13 +2.6
502,966 + ydiB MCAODC_18210 0.23 +2.9
502,998 + ydiB MCAODC_18210 0.26 +0.6
503,080 - ydiB MCAODC_18210 0.36 +0.2
503,082 - ydiB MCAODC_18210 0.36 +1.6
503,222 + ydiB MCAODC_18210 0.52 +1.6
503,469 + ydiB MCAODC_18210 0.81 -0.1
503,469 + ydiB MCAODC_18210 0.81 +1.6
503,469 + ydiB MCAODC_18210 0.81 -2.0
503,491 + ydiB MCAODC_18210 0.83 +0.7
503,491 + ydiB MCAODC_18210 0.83 -0.7
503,604 + +1.6
503,605 - -0.7
503,955 + aroD MCAODC_18215 0.38 +0.6
504,250 - aroD MCAODC_18215 0.77 -1.2
504,319 + aroD MCAODC_18215 0.86 -1.2
504,319 + aroD MCAODC_18215 0.86 -0.8
505,155 + ydiF MCAODC_18220 0.37 +1.0
505,220 + ydiF MCAODC_18220 0.41 -0.4
505,345 + ydiF MCAODC_18220 0.49 +0.2
505,373 + ydiF MCAODC_18220 0.50 -0.7
505,373 + ydiF MCAODC_18220 0.50 -0.7

Or see this region's nucleotide sequence