Strain Fitness in Escherichia coli ECRC101 around MCAODC_16095

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzntB and ynaL are separated by 274 nucleotidesynaL and dbpA are separated by 32 nucleotidesdbpA and ttcA are separated by 128 nucleotides MCAODC_16080: zntB - zinc transporter ZntB, at 106,197 to 107,180 zntB MCAODC_16090: ynaL - Protein YnaL, at 107,455 to 107,625 ynaL MCAODC_16095: dbpA - ATP-dependent RNA helicase DbpA, at 107,658 to 109,031 dbpA MCAODC_16100: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 109,160 to 110,095 ttcA Position (kb) 107 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2 3at 106.777 kb on + strand, within zntBat 106.794 kb on + strand, within zntBat 106.794 kb on + strand, within zntBat 106.796 kb on + strand, within zntBat 106.796 kb on + strand, within zntBat 106.819 kb on - strand, within zntBat 107.000 kb on + strand, within zntBat 107.036 kb on + strand, within zntBat 107.053 kb on + strand, within zntBat 107.324 kb on + strandat 107.341 kb on + strandat 107.342 kb on - strandat 107.348 kb on + strandat 107.409 kb on - strandat 107.601 kb on + strand, within ynaLat 107.601 kb on + strand, within ynaLat 107.724 kb on + strandat 107.728 kb on + strandat 107.728 kb on + strandat 107.881 kb on + strand, within dbpAat 107.881 kb on + strand, within dbpAat 107.894 kb on + strand, within dbpAat 107.996 kb on + strand, within dbpAat 108.029 kb on + strand, within dbpAat 108.032 kb on + strand, within dbpAat 108.101 kb on + strand, within dbpAat 108.101 kb on + strand, within dbpAat 108.364 kb on + strand, within dbpAat 108.365 kb on - strand, within dbpAat 108.634 kb on + strand, within dbpAat 108.635 kb on - strand, within dbpAat 108.770 kb on + strand, within dbpAat 108.773 kb on + strand, within dbpAat 108.856 kb on + strand, within dbpAat 108.859 kb on + strand, within dbpAat 109.105 kb on + strandat 109.125 kb on - strandat 109.474 kb on + strand, within ttcAat 109.528 kb on - strand, within ttcAat 109.586 kb on - strand, within ttcAat 109.586 kb on - strand, within ttcAat 109.586 kb on - strand, within ttcAat 109.613 kb on - strand, within ttcAat 109.617 kb on - strand, within ttcAat 109.774 kb on - strand, within ttcAat 109.938 kb on + strand, within ttcAat 109.938 kb on + strand, within ttcAat 109.939 kb on - strand, within ttcAat 109.939 kb on - strand, within ttcAat 109.939 kb on - strand, within ttcAat 109.939 kb on - strand, within ttcA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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106,777 + zntB MCAODC_16080 0.59 -0.0
106,794 + zntB MCAODC_16080 0.61 +0.2
106,794 + zntB MCAODC_16080 0.61 -0.4
106,796 + zntB MCAODC_16080 0.61 -0.3
106,796 + zntB MCAODC_16080 0.61 +0.6
106,819 - zntB MCAODC_16080 0.63 +1.3
107,000 + zntB MCAODC_16080 0.82 -0.0
107,036 + zntB MCAODC_16080 0.85 -0.8
107,053 + zntB MCAODC_16080 0.87 +0.6
107,324 + +0.9
107,341 + -0.2
107,342 - +1.3
107,348 + -0.2
107,409 - -0.0
107,601 + ynaL MCAODC_16090 0.85 -0.4
107,601 + ynaL MCAODC_16090 0.85 +3.0
107,724 + +1.6
107,728 + -2.2
107,728 + +0.4
107,881 + dbpA MCAODC_16095 0.16 +0.6
107,881 + dbpA MCAODC_16095 0.16 +1.2
107,894 + dbpA MCAODC_16095 0.17 -0.4
107,996 + dbpA MCAODC_16095 0.25 +1.2
108,029 + dbpA MCAODC_16095 0.27 -1.0
108,032 + dbpA MCAODC_16095 0.27 +2.1
108,101 + dbpA MCAODC_16095 0.32 +0.6
108,101 + dbpA MCAODC_16095 0.32 +0.2
108,364 + dbpA MCAODC_16095 0.51 +0.6
108,365 - dbpA MCAODC_16095 0.51 +0.8
108,634 + dbpA MCAODC_16095 0.71 +0.3
108,635 - dbpA MCAODC_16095 0.71 +1.9
108,770 + dbpA MCAODC_16095 0.81 -0.0
108,773 + dbpA MCAODC_16095 0.81 +0.0
108,856 + dbpA MCAODC_16095 0.87 +0.2
108,859 + dbpA MCAODC_16095 0.87 +1.6
109,105 + -0.9
109,125 - +0.3
109,474 + ttcA MCAODC_16100 0.34 -0.0
109,528 - ttcA MCAODC_16100 0.39 +0.6
109,586 - ttcA MCAODC_16100 0.46 -0.9
109,586 - ttcA MCAODC_16100 0.46 -0.4
109,586 - ttcA MCAODC_16100 0.46 +3.6
109,613 - ttcA MCAODC_16100 0.48 -0.0
109,617 - ttcA MCAODC_16100 0.49 -0.4
109,774 - ttcA MCAODC_16100 0.66 -1.4
109,938 + ttcA MCAODC_16100 0.83 -0.1
109,938 + ttcA MCAODC_16100 0.83 +1.6
109,939 - ttcA MCAODC_16100 0.83 -0.1
109,939 - ttcA MCAODC_16100 0.83 -0.9
109,939 - ttcA MCAODC_16100 0.83 +0.5
109,939 - ttcA MCAODC_16100 0.83 +1.6

Or see this region's nucleotide sequence