Strain Fitness in Escherichia coli ECRC101 around MCAODC_15770

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntacrR and acrA are separated by 148 nucleotidesacrA and adeB overlap by 1 nucleotides MCAODC_15765: acrR - TetR family transcriptional regulator, at 42,204 to 42,770 acrR MCAODC_15770: acrA - efflux transporter periplasmic adaptor subunit, at 42,919 to 44,040 acrA MCAODC_15775: adeB - hydrophobe/amphiphile efflux-1 family RND transporter, at 44,040 to 47,129 adeB Position (kb) 42 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 41.933 kb on + strandat 41.934 kb on - strandat 41.965 kb on + strandat 42.015 kb on - strandat 42.097 kb on + strandat 42.098 kb on - strandat 42.111 kb on - strandat 42.302 kb on + strand, within acrRat 42.346 kb on + strand, within acrRat 42.354 kb on + strand, within acrRat 42.377 kb on + strand, within acrRat 42.413 kb on + strand, within acrRat 42.473 kb on + strand, within acrRat 42.545 kb on + strand, within acrRat 42.599 kb on + strand, within acrRat 42.599 kb on + strand, within acrRat 42.662 kb on + strand, within acrRat 42.662 kb on + strand, within acrRat 42.684 kb on + strand, within acrRat 42.926 kb on - strandat 42.927 kb on + strandat 42.929 kb on + strandat 42.959 kb on + strandat 43.133 kb on + strand, within acrAat 43.137 kb on + strand, within acrAat 43.137 kb on + strand, within acrAat 43.229 kb on + strand, within acrAat 43.532 kb on - strand, within acrAat 43.532 kb on - strand, within acrAat 43.532 kb on - strand, within acrAat 43.563 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.566 kb on - strand, within acrAat 43.576 kb on - strand, within acrAat 43.643 kb on - strand, within acrAat 43.742 kb on + strand, within acrAat 43.797 kb on + strand, within acrAat 43.798 kb on - strand, within acrAat 43.833 kb on + strand, within acrAat 43.873 kb on - strand, within acrAat 43.909 kb on + strand, within acrAat 43.909 kb on + strand, within acrAat 44.099 kb on + strandat 44.187 kb on + strandat 44.187 kb on + strandat 44.187 kb on + strandat 44.187 kb on + strandat 44.188 kb on - strandat 44.261 kb on + strandat 44.261 kb on + strandat 44.261 kb on + strandat 44.271 kb on + strandat 44.310 kb on - strandat 44.345 kb on + strandat 44.469 kb on + strand, within adeBat 44.470 kb on - strand, within adeBat 44.628 kb on + strand, within adeBat 44.720 kb on + strand, within adeBat 44.827 kb on + strand, within adeBat 44.865 kb on + strand, within adeBat 44.865 kb on + strand, within adeBat 44.966 kb on + strand, within adeB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
41,933 + -0.0
41,934 - -0.9
41,965 + +0.8
42,015 - +1.8
42,097 + -1.4
42,098 - -1.9
42,111 - -0.8
42,302 + acrR MCAODC_15765 0.17 -1.0
42,346 + acrR MCAODC_15765 0.25 -0.7
42,354 + acrR MCAODC_15765 0.26 -0.6
42,377 + acrR MCAODC_15765 0.31 +0.6
42,413 + acrR MCAODC_15765 0.37 -0.8
42,473 + acrR MCAODC_15765 0.47 -1.9
42,545 + acrR MCAODC_15765 0.60 -1.4
42,599 + acrR MCAODC_15765 0.70 +0.6
42,599 + acrR MCAODC_15765 0.70 -2.7
42,662 + acrR MCAODC_15765 0.81 +1.0
42,662 + acrR MCAODC_15765 0.81 -0.8
42,684 + acrR MCAODC_15765 0.85 -0.0
42,926 - +0.6
42,927 + -0.0
42,929 + -1.8
42,959 + -0.6
43,133 + acrA MCAODC_15770 0.19 +2.6
43,137 + acrA MCAODC_15770 0.19 -1.9
43,137 + acrA MCAODC_15770 0.19 +0.2
43,229 + acrA MCAODC_15770 0.28 +0.8
43,532 - acrA MCAODC_15770 0.55 -0.3
43,532 - acrA MCAODC_15770 0.55 +2.4
43,532 - acrA MCAODC_15770 0.55 +0.4
43,563 - acrA MCAODC_15770 0.57 -0.0
43,566 - acrA MCAODC_15770 0.58 +1.4
43,566 - acrA MCAODC_15770 0.58 -0.4
43,566 - acrA MCAODC_15770 0.58 +0.1
43,576 - acrA MCAODC_15770 0.59 -0.4
43,643 - acrA MCAODC_15770 0.65 -0.0
43,742 + acrA MCAODC_15770 0.73 +3.9
43,797 + acrA MCAODC_15770 0.78 +1.4
43,798 - acrA MCAODC_15770 0.78 -0.5
43,833 + acrA MCAODC_15770 0.81 +1.6
43,873 - acrA MCAODC_15770 0.85 +0.6
43,909 + acrA MCAODC_15770 0.88 +1.6
43,909 + acrA MCAODC_15770 0.88 +0.6
44,099 + +0.2
44,187 + +1.0
44,187 + +1.6
44,187 + -0.3
44,187 + +1.6
44,188 - +0.2
44,261 + -0.9
44,261 + +0.6
44,261 + +0.3
44,271 + +0.2
44,310 - -0.0
44,345 + -2.2
44,469 + adeB MCAODC_15775 0.14 -0.2
44,470 - adeB MCAODC_15775 0.14 +2.3
44,628 + adeB MCAODC_15775 0.19 +0.6
44,720 + adeB MCAODC_15775 0.22 -0.4
44,827 + adeB MCAODC_15775 0.25 +0.6
44,865 + adeB MCAODC_15775 0.27 +1.6
44,865 + adeB MCAODC_15775 0.27 -2.0
44,966 + adeB MCAODC_15775 0.30 +1.1

Or see this region's nucleotide sequence