Strain Fitness in Escherichia coli ECRC101 around MCAODC_14985

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_14975 and MCAODC_14980 are separated by 4 nucleotidesMCAODC_14980 and MCAODC_14985 are separated by 270 nucleotidesMCAODC_14985 and MCAODC_14990 overlap by 1 nucleotidesMCAODC_14990 and MCAODC_14995 are separated by 7 nucleotides MCAODC_14975: MCAODC_14975 - holin, at 2,928,121 to 2,928,336 _14975 MCAODC_14980: MCAODC_14980 - SAR-endolysin, at 2,928,341 to 2,928,874 _14980 MCAODC_14985: MCAODC_14985 - Phage antirepressor protein, at 2,929,145 to 2,929,714 _14985 MCAODC_14990: MCAODC_14990 - hypothetical protein, at 2,929,714 to 2,929,860 _14990 MCAODC_14995: MCAODC_14995 - lysis protein, at 2,929,868 to 2,930,335 _14995 Position (kb) 2929 2930Strain fitness (log2 ratio) -2 -1 0 1at 2928.589 kb on + strand, within MCAODC_14980at 2930.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,928,589 + MCAODC_14980 0.46 -1.6
2,930,488 + -2.5

Or see this region's nucleotide sequence