Strain Fitness in Escherichia coli ECRC101 around MCAODC_14515

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsuT and yeiL are separated by 70 nucleotidesyeiL and rihB are separated by 129 nucleotides MCAODC_14510: psuT - Putative pseudouridine transporter, at 2,855,457 to 2,856,707 psuT MCAODC_14515: yeiL - Regulatory protein YeiL, at 2,856,778 to 2,857,476 yeiL MCAODC_14520: rihB - ribosylpyrimidine nucleosidase, at 2,857,606 to 2,858,547 rihB Position (kb) 2856 2857 2858Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2855.803 kb on - strand, within psuTat 2855.805 kb on + strand, within psuTat 2855.939 kb on + strand, within psuTat 2855.979 kb on - strand, within psuTat 2856.031 kb on - strand, within psuTat 2856.046 kb on + strand, within psuTat 2856.057 kb on + strand, within psuTat 2856.058 kb on - strand, within psuTat 2856.111 kb on - strand, within psuTat 2856.117 kb on - strand, within psuTat 2856.273 kb on - strand, within psuTat 2856.293 kb on + strand, within psuTat 2856.560 kb on + strand, within psuTat 2857.108 kb on + strand, within yeiLat 2857.275 kb on + strand, within yeiLat 2857.275 kb on + strand, within yeiLat 2857.508 kb on + strandat 2857.513 kb on + strandat 2857.745 kb on + strand, within rihBat 2857.843 kb on - strand, within rihBat 2857.924 kb on + strand, within rihBat 2857.924 kb on + strand, within rihBat 2857.924 kb on + strand, within rihBat 2857.924 kb on + strand, within rihBat 2858.010 kb on + strand, within rihBat 2858.010 kb on + strand, within rihBat 2858.010 kb on + strand, within rihBat 2858.065 kb on + strand, within rihBat 2858.066 kb on - strand, within rihBat 2858.364 kb on + strand, within rihBat 2858.380 kb on + strand, within rihBat 2858.380 kb on + strand, within rihBat 2858.381 kb on - strand, within rihBat 2858.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,855,803 - psuT MCAODC_14510 0.28 +1.7
2,855,805 + psuT MCAODC_14510 0.28 -1.3
2,855,939 + psuT MCAODC_14510 0.39 +1.2
2,855,979 - psuT MCAODC_14510 0.42 +0.2
2,856,031 - psuT MCAODC_14510 0.46 +0.7
2,856,046 + psuT MCAODC_14510 0.47 -0.3
2,856,057 + psuT MCAODC_14510 0.48 -0.3
2,856,058 - psuT MCAODC_14510 0.48 -0.6
2,856,111 - psuT MCAODC_14510 0.52 -2.0
2,856,117 - psuT MCAODC_14510 0.53 -0.7
2,856,273 - psuT MCAODC_14510 0.65 +0.1
2,856,293 + psuT MCAODC_14510 0.67 -0.3
2,856,560 + psuT MCAODC_14510 0.88 -1.1
2,857,108 + yeiL MCAODC_14515 0.47 -0.3
2,857,275 + yeiL MCAODC_14515 0.71 +0.8
2,857,275 + yeiL MCAODC_14515 0.71 -0.5
2,857,508 + +0.1
2,857,513 + -0.4
2,857,745 + rihB MCAODC_14520 0.15 -1.1
2,857,843 - rihB MCAODC_14520 0.25 +0.1
2,857,924 + rihB MCAODC_14520 0.34 -0.1
2,857,924 + rihB MCAODC_14520 0.34 -2.3
2,857,924 + rihB MCAODC_14520 0.34 +0.7
2,857,924 + rihB MCAODC_14520 0.34 -0.3
2,858,010 + rihB MCAODC_14520 0.43 +3.7
2,858,010 + rihB MCAODC_14520 0.43 -0.0
2,858,010 + rihB MCAODC_14520 0.43 -0.3
2,858,065 + rihB MCAODC_14520 0.49 +1.0
2,858,066 - rihB MCAODC_14520 0.49 +2.1
2,858,364 + rihB MCAODC_14520 0.80 -0.7
2,858,380 + rihB MCAODC_14520 0.82 -0.3
2,858,380 + rihB MCAODC_14520 0.82 -0.3
2,858,381 - rihB MCAODC_14520 0.82 +0.7
2,858,464 - -0.1

Or see this region's nucleotide sequence