Strain Fitness in Escherichia coli ECRC101 around MCAODC_14495

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfruB and fruB overlap by 1 nucleotidesfruB and fruA are separated by 16 nucleotidesfruA and psuK are separated by 423 nucleotides MCAODC_14485: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,849,296 to 2,850,426 fruB MCAODC_14490: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,850,426 to 2,851,364 fruB MCAODC_14495: fruA - PTS fructose transporter subunit IIBC, at 2,851,381 to 2,853,072 fruA MCAODC_14500: psuK - pseudouridine kinase, at 2,853,496 to 2,854,437 psuK Position (kb) 2851 2852 2853 2854Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2850.443 kb on + strandat 2850.443 kb on + strandat 2850.443 kb on + strandat 2850.443 kb on + strandat 2850.443 kb on + strandat 2850.446 kb on + strandat 2850.446 kb on + strandat 2850.465 kb on + strandat 2850.682 kb on + strand, within fruBat 2850.683 kb on - strand, within fruBat 2850.701 kb on + strand, within fruBat 2850.927 kb on - strand, within fruBat 2850.946 kb on + strand, within fruBat 2850.947 kb on - strand, within fruBat 2851.073 kb on + strand, within fruBat 2851.088 kb on + strand, within fruBat 2851.088 kb on + strand, within fruBat 2851.193 kb on + strand, within fruBat 2851.193 kb on + strand, within fruBat 2851.222 kb on + strand, within fruBat 2851.301 kb on + strandat 2851.301 kb on + strandat 2851.348 kb on + strandat 2851.379 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.429 kb on + strandat 2851.430 kb on - strandat 2851.430 kb on - strandat 2851.642 kb on + strand, within fruAat 2851.643 kb on - strand, within fruAat 2851.643 kb on - strand, within fruAat 2851.697 kb on + strand, within fruAat 2851.727 kb on + strand, within fruAat 2851.740 kb on + strand, within fruAat 2851.882 kb on - strand, within fruAat 2851.922 kb on - strand, within fruAat 2851.997 kb on - strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.086 kb on + strand, within fruAat 2852.087 kb on - strand, within fruAat 2852.087 kb on - strand, within fruAat 2852.243 kb on - strand, within fruAat 2852.244 kb on + strand, within fruAat 2852.363 kb on - strand, within fruAat 2852.363 kb on - strand, within fruAat 2852.476 kb on + strand, within fruAat 2852.476 kb on + strand, within fruAat 2852.477 kb on - strand, within fruAat 2852.589 kb on + strand, within fruAat 2852.589 kb on + strand, within fruAat 2852.610 kb on - strand, within fruAat 2852.614 kb on - strand, within fruAat 2852.623 kb on + strand, within fruAat 2852.624 kb on - strand, within fruAat 2852.660 kb on - strand, within fruAat 2852.692 kb on - strand, within fruAat 2852.859 kb on + strand, within fruAat 2852.959 kb on - strandat 2852.961 kb on + strandat 2852.961 kb on + strandat 2852.977 kb on + strandat 2852.984 kb on + strandat 2852.991 kb on + strandat 2852.992 kb on - strandat 2853.023 kb on - strandat 2853.074 kb on - strandat 2853.219 kb on + strandat 2853.314 kb on - strandat 2853.379 kb on + strandat 2853.379 kb on + strandat 2853.391 kb on - strandat 2853.425 kb on + strandat 2853.445 kb on + strandat 2853.445 kb on + strandat 2853.446 kb on - strandat 2853.446 kb on - strandat 2853.924 kb on + strand, within psuK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
2,850,443 + +0.7
2,850,443 + +0.1
2,850,443 + +0.7
2,850,443 + +0.5
2,850,443 + +0.3
2,850,446 + -0.6
2,850,446 + +1.5
2,850,465 + +0.7
2,850,682 + fruB MCAODC_14490 0.27 -0.7
2,850,683 - fruB MCAODC_14490 0.27 +0.6
2,850,701 + fruB MCAODC_14490 0.29 +0.6
2,850,927 - fruB MCAODC_14490 0.53 -2.1
2,850,946 + fruB MCAODC_14490 0.55 -2.4
2,850,947 - fruB MCAODC_14490 0.55 +0.8
2,851,073 + fruB MCAODC_14490 0.69 -2.8
2,851,088 + fruB MCAODC_14490 0.71 -0.3
2,851,088 + fruB MCAODC_14490 0.71 -0.9
2,851,193 + fruB MCAODC_14490 0.82 +0.1
2,851,193 + fruB MCAODC_14490 0.82 -1.9
2,851,222 + fruB MCAODC_14490 0.85 -0.8
2,851,301 + -0.5
2,851,301 + -0.9
2,851,348 + -0.2
2,851,379 + -2.0
2,851,429 + +0.3
2,851,429 + -1.1
2,851,429 + +2.0
2,851,429 + +0.0
2,851,429 + +0.9
2,851,429 + +0.7
2,851,429 + -0.1
2,851,429 + +0.1
2,851,430 - -0.2
2,851,430 - +0.7
2,851,642 + fruA MCAODC_14495 0.15 +2.2
2,851,643 - fruA MCAODC_14495 0.15 -0.9
2,851,643 - fruA MCAODC_14495 0.15 +0.7
2,851,697 + fruA MCAODC_14495 0.19 -0.8
2,851,727 + fruA MCAODC_14495 0.20 +0.3
2,851,740 + fruA MCAODC_14495 0.21 +0.5
2,851,882 - fruA MCAODC_14495 0.30 +0.3
2,851,922 - fruA MCAODC_14495 0.32 +0.7
2,851,997 - fruA MCAODC_14495 0.36 -2.4
2,852,086 + fruA MCAODC_14495 0.42 -0.6
2,852,086 + fruA MCAODC_14495 0.42 +0.9
2,852,086 + fruA MCAODC_14495 0.42 -0.9
2,852,086 + fruA MCAODC_14495 0.42 +0.7
2,852,086 + fruA MCAODC_14495 0.42 -0.9
2,852,086 + fruA MCAODC_14495 0.42 +0.7
2,852,087 - fruA MCAODC_14495 0.42 -0.8
2,852,087 - fruA MCAODC_14495 0.42 -0.3
2,852,243 - fruA MCAODC_14495 0.51 +0.7
2,852,244 + fruA MCAODC_14495 0.51 -0.7
2,852,363 - fruA MCAODC_14495 0.58 +0.7
2,852,363 - fruA MCAODC_14495 0.58 +1.7
2,852,476 + fruA MCAODC_14495 0.65 -0.3
2,852,476 + fruA MCAODC_14495 0.65 +0.9
2,852,477 - fruA MCAODC_14495 0.65 +0.1
2,852,589 + fruA MCAODC_14495 0.71 -1.2
2,852,589 + fruA MCAODC_14495 0.71 -0.7
2,852,610 - fruA MCAODC_14495 0.73 -1.1
2,852,614 - fruA MCAODC_14495 0.73 +0.1
2,852,623 + fruA MCAODC_14495 0.73 -0.4
2,852,624 - fruA MCAODC_14495 0.73 -0.7
2,852,660 - fruA MCAODC_14495 0.76 -0.7
2,852,692 - fruA MCAODC_14495 0.77 +0.5
2,852,859 + fruA MCAODC_14495 0.87 -0.3
2,852,959 - -1.1
2,852,961 + -0.0
2,852,961 + -1.3
2,852,977 + +0.9
2,852,984 + +0.8
2,852,991 + +1.2
2,852,992 - -2.7
2,853,023 - +3.2
2,853,074 - -0.9
2,853,219 + -1.3
2,853,314 - +1.2
2,853,379 + -0.3
2,853,379 + +0.1
2,853,391 - +0.4
2,853,425 + +0.8
2,853,445 + -0.2
2,853,445 + -0.7
2,853,446 - -2.4
2,853,446 - -1.6
2,853,924 + psuK MCAODC_14500 0.45 -1.8

Or see this region's nucleotide sequence