Strain Fitness in Escherichia coli ECRC101 around MCAODC_11260

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalaS and csrA are separated by 234 nucleotidescsrA and Ser_trna are separated by 315 nucleotidesSer_trna and Arg_trna are separated by 3 nucleotidesArg_trna and Arg_trna are separated by 64 nucleotidesArg_trna and Arg_trna are separated by 62 nucleotidesArg_trna and Arg_trna are separated by 102 nucleotidesArg_trna and yqaB are separated by 280 nucleotides MCAODC_11240: alaS - alanine--tRNA ligase, at 2,239,019 to 2,241,649 alaS MCAODC_11245: csrA - carbon storage regulator CsrA, at 2,241,884 to 2,242,069 csrA MCAODC_11250: Ser_trna - tRNA-Ser(gct), at 2,242,385 to 2,242,477 _trna MCAODC_11255: Arg_trna - tRNA-Arg(acg), at 2,242,481 to 2,242,557 _trna MCAODC_11260: Arg_trna - tRNA-Arg(acg), at 2,242,622 to 2,242,698 _trna MCAODC_11265: Arg_trna - tRNA-Arg(acg), at 2,242,761 to 2,242,837 _trna MCAODC_11270: Arg_trna - tRNA-Arg(acg), at 2,242,940 to 2,243,016 _trna MCAODC_11275: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 2,243,297 to 2,243,863 yqaB Position (kb) 2242 2243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2241.648 kb on - strandat 2241.650 kb on + strandat 2241.650 kb on + strandat 2241.650 kb on + strandat 2241.650 kb on + strandat 2241.650 kb on + strandat 2241.651 kb on - strandat 2241.651 kb on - strandat 2241.651 kb on - strandat 2241.651 kb on - strandat 2241.652 kb on + strandat 2241.652 kb on + strandat 2241.652 kb on + strandat 2241.652 kb on + strandat 2241.652 kb on + strandat 2241.652 kb on + strandat 2241.653 kb on - strandat 2241.653 kb on - strandat 2241.735 kb on + strandat 2241.735 kb on + strandat 2241.736 kb on - strandat 2241.736 kb on - strandat 2241.736 kb on - strandat 2241.766 kb on + strandat 2241.766 kb on + strandat 2241.782 kb on + strandat 2241.782 kb on + strandat 2241.782 kb on + strandat 2241.783 kb on - strandat 2241.783 kb on - strandat 2241.788 kb on + strandat 2241.788 kb on + strandat 2241.788 kb on + strandat 2241.788 kb on + strandat 2241.789 kb on - strandat 2241.820 kb on + strandat 2241.821 kb on - strandat 2242.064 kb on + strandat 2242.068 kb on - strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.127 kb on + strandat 2242.128 kb on - strandat 2242.130 kb on - strandat 2242.163 kb on - strandat 2242.163 kb on - strandat 2242.163 kb on - strandat 2242.184 kb on - strandat 2242.219 kb on - strandat 2242.249 kb on - strandat 2242.563 kb on + strandat 2242.570 kb on + strandat 2242.578 kb on + strandat 2242.604 kb on + strandat 2242.711 kb on + strandat 2242.711 kb on + strandat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.719 kb on + strandat 2242.838 kb on + strandat 2242.867 kb on + strandat 2242.897 kb on + strandat 2242.912 kb on + strandat 2243.017 kb on + strandat 2243.098 kb on + strandat 2243.188 kb on + strandat 2243.196 kb on + strandat 2243.196 kb on + strandat 2243.197 kb on - strandat 2243.255 kb on + strandat 2243.256 kb on - strandat 2243.265 kb on + strandat 2243.265 kb on + strandat 2243.301 kb on - strandat 2243.385 kb on + strand, within yqaBat 2243.389 kb on - strand, within yqaBat 2243.434 kb on + strand, within yqaBat 2243.435 kb on - strand, within yqaBat 2243.456 kb on - strand, within yqaBat 2243.470 kb on + strand, within yqaBat 2243.471 kb on - strand, within yqaBat 2243.532 kb on + strand, within yqaBat 2243.533 kb on - strand, within yqaBat 2243.533 kb on - strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.539 kb on + strand, within yqaBat 2243.540 kb on - strand, within yqaBat 2243.552 kb on - strand, within yqaBat 2243.616 kb on + strand, within yqaBat 2243.679 kb on - strand, within yqaB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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2,241,648 - -1.2
2,241,650 + -1.8
2,241,650 + -0.8
2,241,650 + -0.9
2,241,650 + -1.2
2,241,650 + -0.1
2,241,651 - +0.8
2,241,651 - -0.8
2,241,651 - -2.1
2,241,651 - +0.8
2,241,652 + +0.1
2,241,652 + -0.2
2,241,652 + -0.8
2,241,652 + -0.0
2,241,652 + +1.1
2,241,652 + -0.2
2,241,653 - -2.1
2,241,653 - -0.2
2,241,735 + -2.6
2,241,735 + -0.7
2,241,736 - +1.8
2,241,736 - +0.8
2,241,736 - +0.8
2,241,766 + -2.1
2,241,766 + -1.2
2,241,782 + +0.8
2,241,782 + +1.2
2,241,782 + -0.6
2,241,783 - +1.8
2,241,783 - +0.2
2,241,788 + +0.8
2,241,788 + +0.8
2,241,788 + -0.4
2,241,788 + -0.5
2,241,789 - +1.8
2,241,820 + -0.1
2,241,821 - -0.8
2,242,064 + -0.6
2,242,068 - -1.2
2,242,127 + -0.1
2,242,127 + +1.0
2,242,127 + -0.6
2,242,127 + -0.6
2,242,127 + -1.8
2,242,128 - +0.5
2,242,130 - -0.7
2,242,163 - +0.4
2,242,163 - +0.6
2,242,163 - -1.3
2,242,184 - -1.1
2,242,219 - -1.2
2,242,249 - -0.8
2,242,563 + -0.8
2,242,570 + +1.6
2,242,578 + -1.1
2,242,604 + -0.4
2,242,711 + -1.8
2,242,711 + -1.4
2,242,719 + -1.2
2,242,719 + -0.1
2,242,719 + -0.7
2,242,838 + -0.7
2,242,867 + +0.2
2,242,897 + -0.3
2,242,912 + +0.0
2,243,017 + -0.7
2,243,098 + +1.2
2,243,188 + -0.6
2,243,196 + -0.2
2,243,196 + -0.0
2,243,197 - -0.4
2,243,255 + -0.2
2,243,256 - -2.6
2,243,265 + -1.1
2,243,265 + -0.1
2,243,301 - -0.2
2,243,385 + yqaB MCAODC_11275 0.16 -1.6
2,243,389 - yqaB MCAODC_11275 0.16 +0.2
2,243,434 + yqaB MCAODC_11275 0.24 -1.2
2,243,435 - yqaB MCAODC_11275 0.24 +0.8
2,243,456 - yqaB MCAODC_11275 0.28 -0.6
2,243,470 + yqaB MCAODC_11275 0.31 -0.8
2,243,471 - yqaB MCAODC_11275 0.31 -1.2
2,243,532 + yqaB MCAODC_11275 0.41 +0.5
2,243,533 - yqaB MCAODC_11275 0.42 +3.3
2,243,533 - yqaB MCAODC_11275 0.42 -0.5
2,243,539 + yqaB MCAODC_11275 0.43 -2.2
2,243,539 + yqaB MCAODC_11275 0.43 +0.2
2,243,539 + yqaB MCAODC_11275 0.43 +1.3
2,243,540 - yqaB MCAODC_11275 0.43 -0.4
2,243,552 - yqaB MCAODC_11275 0.45 -0.8
2,243,616 + yqaB MCAODC_11275 0.56 +0.4
2,243,679 - yqaB MCAODC_11275 0.67 -1.4

Or see this region's nucleotide sequence