Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arsB and arsR are separated by 53 nucleotides arsR and MCAODC_06915 are separated by 542 nucleotides MCAODC_06915 and gorA are separated by 164 nucleotides
MCAODC_06895: arsB - arsenite/antimonite:H(+) antiporter ArsB, at 1,401,658 to 1,402,947
arsB
MCAODC_06900: arsR - As(III)-sensing metalloregulatory transcriptional repressor ArsR, at 1,403,001 to 1,403,354
arsR
MCAODC_06915: MCAODC_06915 - hypothetical protein, at 1,403,897 to 1,404,070
_06915
MCAODC_06920: gorA - glutathione-disulfide reductase, at 1,404,235 to 1,405,587
gorA
Position (kb)
1403
1404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1402.024 kb on + strand, within arsB at 1402.037 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.079 kb on + strand, within arsB at 1402.080 kb on - strand, within arsB at 1402.080 kb on - strand, within arsB at 1402.131 kb on + strand, within arsB at 1402.137 kb on + strand, within arsB at 1402.171 kb on + strand, within arsB at 1402.171 kb on + strand, within arsB at 1402.171 kb on + strand, within arsB at 1402.172 kb on - strand, within arsB at 1402.172 kb on - strand, within arsB at 1402.172 kb on - strand, within arsB at 1402.172 kb on - strand, within arsB at 1402.172 kb on - strand, within arsB at 1402.175 kb on - strand, within arsB at 1402.256 kb on - strand, within arsB at 1402.256 kb on - strand, within arsB at 1402.256 kb on - strand, within arsB at 1402.281 kb on + strand, within arsB at 1402.281 kb on + strand, within arsB at 1402.281 kb on + strand, within arsB at 1402.282 kb on - strand, within arsB at 1402.293 kb on + strand, within arsB at 1402.293 kb on + strand, within arsB at 1402.331 kb on + strand, within arsB at 1402.331 kb on + strand, within arsB at 1402.331 kb on + strand, within arsB at 1402.332 kb on - strand, within arsB at 1402.332 kb on - strand, within arsB at 1402.344 kb on + strand, within arsB at 1402.345 kb on - strand, within arsB at 1402.359 kb on - strand, within arsB at 1402.424 kb on + strand, within arsB at 1402.464 kb on + strand, within arsB at 1402.465 kb on - strand, within arsB at 1402.485 kb on + strand, within arsB at 1402.485 kb on + strand, within arsB at 1402.485 kb on + strand, within arsB at 1402.486 kb on - strand, within arsB at 1402.543 kb on - strand, within arsB at 1402.663 kb on - strand, within arsB at 1402.755 kb on + strand, within arsB at 1402.755 kb on + strand, within arsB at 1402.755 kb on + strand, within arsB at 1402.755 kb on + strand, within arsB at 1402.755 kb on + strand, within arsB at 1402.756 kb on - strand, within arsB at 1402.767 kb on + strand, within arsB at 1402.768 kb on - strand, within arsB at 1402.825 kb on + strand at 1402.825 kb on + strand at 1402.826 kb on - strand at 1402.828 kb on + strand at 1402.828 kb on + strand at 1402.828 kb on + strand at 1402.837 kb on - strand at 1402.837 kb on - strand at 1402.841 kb on - strand at 1402.841 kb on - strand at 1402.841 kb on - strand at 1402.883 kb on - strand at 1402.909 kb on + strand at 1402.909 kb on + strand at 1402.910 kb on - strand at 1402.910 kb on - strand at 1402.910 kb on - strand at 1402.943 kb on - strand at 1402.947 kb on + strand at 1403.006 kb on + strand at 1403.006 kb on + strand at 1403.018 kb on + strand at 1403.102 kb on + strand, within arsR at 1403.126 kb on + strand, within arsR at 1403.127 kb on - strand, within arsR at 1403.156 kb on + strand, within arsR at 1403.156 kb on + strand, within arsR at 1403.156 kb on + strand, within arsR at 1403.157 kb on - strand, within arsR at 1403.262 kb on + strand, within arsR at 1403.263 kb on - strand, within arsR at 1403.354 kb on + strand at 1403.354 kb on + strand at 1403.355 kb on - strand at 1403.355 kb on - strand at 1403.355 kb on - strand at 1403.355 kb on - strand at 1403.453 kb on - strand at 1403.453 kb on - strand at 1403.507 kb on - strand at 1403.535 kb on - strand at 1403.586 kb on + strand at 1403.586 kb on + strand at 1403.587 kb on - strand at 1403.597 kb on + strand at 1403.597 kb on + strand at 1403.598 kb on - strand at 1403.598 kb on - strand at 1403.600 kb on + strand at 1403.600 kb on + strand at 1403.601 kb on - strand at 1403.601 kb on - strand at 1403.601 kb on - strand at 1403.614 kb on + strand at 1403.614 kb on + strand at 1403.615 kb on - strand at 1403.615 kb on - strand at 1403.664 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.666 kb on + strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.667 kb on - strand at 1403.688 kb on + strand at 1403.688 kb on + strand at 1403.688 kb on + strand at 1403.688 kb on + strand at 1403.688 kb on + strand at 1403.688 kb on + strand at 1403.689 kb on - strand at 1403.689 kb on - strand at 1403.689 kb on - strand at 1403.689 kb on - strand at 1403.692 kb on + strand at 1403.692 kb on + strand at 1403.693 kb on - strand at 1403.822 kb on - strand at 1403.822 kb on - strand at 1403.835 kb on + strand at 1403.838 kb on + strand at 1403.843 kb on + strand at 1403.874 kb on + strand at 1403.885 kb on + strand at 1403.893 kb on - strand at 1403.906 kb on + strand at 1403.940 kb on + strand, within MCAODC_06915 at 1403.940 kb on + strand, within MCAODC_06915 at 1404.011 kb on - strand, within MCAODC_06915 at 1404.017 kb on - strand, within MCAODC_06915 at 1404.017 kb on - strand, within MCAODC_06915 at 1404.020 kb on + strand, within MCAODC_06915 at 1404.020 kb on + strand, within MCAODC_06915 at 1404.020 kb on + strand, within MCAODC_06915 at 1404.020 kb on + strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.021 kb on - strand, within MCAODC_06915 at 1404.026 kb on + strand, within MCAODC_06915 at 1404.058 kb on + strand at 1404.059 kb on - strand at 1404.084 kb on + strand at 1404.085 kb on - strand at 1404.106 kb on + strand at 1404.133 kb on - strand at 1404.133 kb on - strand at 1404.193 kb on + strand at 1404.193 kb on + strand at 1404.194 kb on - strand at 1404.194 kb on - strand at 1404.197 kb on + strand at 1404.229 kb on + strand at 1404.236 kb on + strand at 1404.236 kb on + strand at 1404.237 kb on - strand at 1404.286 kb on - strand at 1404.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 1,402,024 + arsB MCAODC_06895 0.28 -0.1 1,402,037 + arsB MCAODC_06895 0.29 -1.1 1,402,079 + arsB MCAODC_06895 0.33 -1.1 1,402,079 + arsB MCAODC_06895 0.33 -0.1 1,402,079 + arsB MCAODC_06895 0.33 +0.9 1,402,079 + arsB MCAODC_06895 0.33 +0.8 1,402,079 + arsB MCAODC_06895 0.33 -0.6 1,402,079 + arsB MCAODC_06895 0.33 +0.0 1,402,079 + arsB MCAODC_06895 0.33 +0.3 1,402,080 - arsB MCAODC_06895 0.33 -0.1 1,402,080 - arsB MCAODC_06895 0.33 -0.7 1,402,131 + arsB MCAODC_06895 0.37 -1.0 1,402,137 + arsB MCAODC_06895 0.37 -0.1 1,402,171 + arsB MCAODC_06895 0.40 -0.1 1,402,171 + arsB MCAODC_06895 0.40 -0.4 1,402,171 + arsB MCAODC_06895 0.40 -0.2 1,402,172 - arsB MCAODC_06895 0.40 +0.6 1,402,172 - arsB MCAODC_06895 0.40 -0.1 1,402,172 - arsB MCAODC_06895 0.40 -0.6 1,402,172 - arsB MCAODC_06895 0.40 +0.2 1,402,172 - arsB MCAODC_06895 0.40 -0.4 1,402,175 - arsB MCAODC_06895 0.40 -0.8 1,402,256 - arsB MCAODC_06895 0.46 -0.2 1,402,256 - arsB MCAODC_06895 0.46 -0.1 1,402,256 - arsB MCAODC_06895 0.46 +0.4 1,402,281 + arsB MCAODC_06895 0.48 -0.1 1,402,281 + arsB MCAODC_06895 0.48 -0.3 1,402,281 + arsB MCAODC_06895 0.48 -1.8 1,402,282 - arsB MCAODC_06895 0.48 +1.1 1,402,293 + arsB MCAODC_06895 0.49 +0.3 1,402,293 + arsB MCAODC_06895 0.49 -1.2 1,402,331 + arsB MCAODC_06895 0.52 +0.2 1,402,331 + arsB MCAODC_06895 0.52 +0.4 1,402,331 + arsB MCAODC_06895 0.52 -0.9 1,402,332 - arsB MCAODC_06895 0.52 +1.1 1,402,332 - arsB MCAODC_06895 0.52 -0.1 1,402,344 + arsB MCAODC_06895 0.53 +0.9 1,402,345 - arsB MCAODC_06895 0.53 +1.9 1,402,359 - arsB MCAODC_06895 0.54 -0.1 1,402,424 + arsB MCAODC_06895 0.59 -0.3 1,402,464 + arsB MCAODC_06895 0.62 -0.9 1,402,465 - arsB MCAODC_06895 0.63 -0.6 1,402,485 + arsB MCAODC_06895 0.64 +0.9 1,402,485 + arsB MCAODC_06895 0.64 -0.5 1,402,485 + arsB MCAODC_06895 0.64 -0.2 1,402,486 - arsB MCAODC_06895 0.64 -0.4 1,402,543 - arsB MCAODC_06895 0.69 +0.8 1,402,663 - arsB MCAODC_06895 0.78 -0.1 1,402,755 + arsB MCAODC_06895 0.85 +2.1 1,402,755 + arsB MCAODC_06895 0.85 +1.0 1,402,755 + arsB MCAODC_06895 0.85 -0.2 1,402,755 + arsB MCAODC_06895 0.85 +0.9 1,402,755 + arsB MCAODC_06895 0.85 +1.4 1,402,756 - arsB MCAODC_06895 0.85 +0.1 1,402,767 + arsB MCAODC_06895 0.86 +0.4 1,402,768 - arsB MCAODC_06895 0.86 +0.5 1,402,825 + -0.1 1,402,825 + -1.9 1,402,826 - -1.4 1,402,828 + -1.9 1,402,828 + -0.1 1,402,828 + +0.8 1,402,837 - +0.2 1,402,837 - +0.0 1,402,841 - +0.1 1,402,841 - -0.2 1,402,841 - -0.0 1,402,883 - +0.9 1,402,909 + +0.6 1,402,909 + +1.9 1,402,910 - -1.4 1,402,910 - +1.1 1,402,910 - +1.9 1,402,943 - +0.2 1,402,947 + +0.1 1,403,006 + -0.8 1,403,006 + -1.1 1,403,018 + +0.2 1,403,102 + arsR MCAODC_06900 0.29 -0.7 1,403,126 + arsR MCAODC_06900 0.35 +1.4 1,403,127 - arsR MCAODC_06900 0.36 -1.1 1,403,156 + arsR MCAODC_06900 0.44 -0.3 1,403,156 + arsR MCAODC_06900 0.44 -0.3 1,403,156 + arsR MCAODC_06900 0.44 -1.6 1,403,157 - arsR MCAODC_06900 0.44 -0.4 1,403,262 + arsR MCAODC_06900 0.74 +0.9 1,403,263 - arsR MCAODC_06900 0.74 -1.1 1,403,354 + +0.2 1,403,354 + +2.5 1,403,355 - -0.8 1,403,355 - +0.5 1,403,355 - -0.1 1,403,355 - -0.2 1,403,453 - -1.1 1,403,453 - -1.0 1,403,507 - -0.6 1,403,535 - -1.8 1,403,586 + +1.2 1,403,586 + -0.1 1,403,587 - +0.0 1,403,597 + -0.2 1,403,597 + -0.1 1,403,598 - +0.2 1,403,598 - -0.1 1,403,600 + -0.8 1,403,600 + -2.8 1,403,601 - +0.7 1,403,601 - +0.4 1,403,601 - +0.3 1,403,614 + +1.2 1,403,614 + +0.1 1,403,615 - -0.5 1,403,615 - -1.0 1,403,664 + +0.6 1,403,666 + -0.0 1,403,666 + +0.1 1,403,666 + -0.6 1,403,666 + -0.0 1,403,666 + -0.0 1,403,666 + -0.7 1,403,666 + -0.1 1,403,666 + -0.9 1,403,667 - -2.5 1,403,667 - -0.9 1,403,667 - -1.3 1,403,667 - -2.5 1,403,667 - +1.3 1,403,667 - -1.2 1,403,667 - -0.3 1,403,667 - -0.1 1,403,667 - +0.0 1,403,667 - -1.6 1,403,667 - -0.9 1,403,667 - +0.2 1,403,688 + -0.2 1,403,688 + -0.1 1,403,688 + -1.5 1,403,688 + -0.1 1,403,688 + +0.4 1,403,688 + -0.4 1,403,689 - -0.1 1,403,689 - +0.9 1,403,689 - +1.1 1,403,689 - +0.0 1,403,692 + +0.3 1,403,692 + -0.9 1,403,693 - -0.9 1,403,822 - -1.8 1,403,822 - +0.2 1,403,835 + -0.1 1,403,838 + -0.2 1,403,843 + +0.7 1,403,874 + +1.9 1,403,885 + +0.5 1,403,893 - -1.1 1,403,906 + -0.4 1,403,940 + MCAODC_06915 0.25 +1.1 1,403,940 + MCAODC_06915 0.25 +0.8 1,404,011 - MCAODC_06915 0.66 -0.5 1,404,017 - MCAODC_06915 0.69 +0.5 1,404,017 - MCAODC_06915 0.69 +0.3 1,404,020 + MCAODC_06915 0.71 +0.0 1,404,020 + MCAODC_06915 0.71 -0.5 1,404,020 + MCAODC_06915 0.71 -0.4 1,404,020 + MCAODC_06915 0.71 -0.2 1,404,021 - MCAODC_06915 0.71 -1.4 1,404,021 - MCAODC_06915 0.71 -0.5 1,404,021 - MCAODC_06915 0.71 +0.7 1,404,021 - MCAODC_06915 0.71 -2.1 1,404,021 - MCAODC_06915 0.71 -0.4 1,404,021 - MCAODC_06915 0.71 -1.3 1,404,026 + MCAODC_06915 0.74 -0.5 1,404,058 + -1.0 1,404,059 - -0.6 1,404,084 + -1.4 1,404,085 - -0.3 1,404,106 + +0.3 1,404,133 - -2.4 1,404,133 - -0.9 1,404,193 + -1.1 1,404,193 + -0.1 1,404,194 - -0.4 1,404,194 - -0.6 1,404,197 + -0.7 1,404,229 + -0.6 1,404,236 + +0.9 1,404,236 + +3.5 1,404,237 - +0.3 1,404,286 - +0.9 1,404,289 - +1.4
Or see this region's nucleotide sequence