Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihN and yihM are separated by 101 nucleotides yihM and yihL are separated by 7 nucleotides yihL and typA are separated by 216 nucleotides
MCAODC_04570: yihN - Inner membrane protein YihN, at 926,839 to 928,104
yihN
MCAODC_04575: yihM - Uncharacterized protein YihM, at 928,206 to 929,186
yihM
MCAODC_04580: yihL - Uncharacterized HTH-type transcriptional regulator YihL, at 929,194 to 929,904
yihL
MCAODC_04590: typA - ribosome-dependent GTPase TypA, at 930,121 to 931,944
typA
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.223 kb on - strand, within yihN at 927.230 kb on + strand, within yihN at 927.230 kb on + strand, within yihN at 927.230 kb on + strand, within yihN at 927.231 kb on - strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.235 kb on + strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.236 kb on - strand, within yihN at 927.239 kb on + strand, within yihN at 927.239 kb on + strand, within yihN at 927.240 kb on - strand, within yihN at 927.311 kb on + strand, within yihN at 927.330 kb on - strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.355 kb on + strand, within yihN at 927.356 kb on - strand, within yihN at 927.359 kb on + strand, within yihN at 927.359 kb on + strand, within yihN at 927.360 kb on - strand, within yihN at 927.360 kb on - strand, within yihN at 927.360 kb on - strand, within yihN at 927.401 kb on + strand, within yihN at 927.435 kb on + strand, within yihN at 927.445 kb on - strand, within yihN at 927.471 kb on + strand, within yihN at 927.553 kb on - strand, within yihN at 927.555 kb on + strand, within yihN at 927.584 kb on + strand, within yihN at 927.585 kb on - strand, within yihN at 927.603 kb on + strand, within yihN at 927.611 kb on - strand, within yihN at 927.613 kb on + strand, within yihN at 927.614 kb on - strand, within yihN at 927.614 kb on - strand, within yihN at 927.633 kb on + strand, within yihN at 927.633 kb on + strand, within yihN at 927.634 kb on - strand, within yihN at 927.780 kb on + strand, within yihN at 927.781 kb on - strand, within yihN at 927.818 kb on + strand, within yihN at 927.840 kb on - strand, within yihN at 927.884 kb on + strand, within yihN at 927.895 kb on + strand, within yihN at 927.960 kb on + strand, within yihN at 927.960 kb on + strand, within yihN at 927.961 kb on - strand, within yihN at 927.966 kb on + strand, within yihN at 928.036 kb on + strand at 928.075 kb on - strand at 928.148 kb on + strand at 928.179 kb on + strand at 928.179 kb on + strand at 928.251 kb on + strand at 928.373 kb on + strand, within yihM at 928.373 kb on + strand, within yihM at 928.409 kb on - strand, within yihM at 928.409 kb on - strand, within yihM at 928.411 kb on + strand, within yihM at 928.412 kb on - strand, within yihM at 928.436 kb on - strand, within yihM at 928.472 kb on + strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.473 kb on - strand, within yihM at 928.483 kb on - strand, within yihM at 928.485 kb on + strand, within yihM at 928.485 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.502 kb on + strand, within yihM at 928.521 kb on - strand, within yihM at 928.529 kb on + strand, within yihM at 928.529 kb on + strand, within yihM at 928.587 kb on - strand, within yihM at 928.720 kb on - strand, within yihM at 928.765 kb on + strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.810 kb on - strand, within yihM at 928.895 kb on + strand, within yihM at 928.896 kb on - strand, within yihM at 928.931 kb on + strand, within yihM at 928.932 kb on - strand, within yihM at 929.040 kb on + strand, within yihM at 929.040 kb on + strand, within yihM at 929.125 kb on - strand at 929.176 kb on - strand at 929.234 kb on + strand at 929.242 kb on - strand at 929.242 kb on - strand at 929.243 kb on + strand at 929.257 kb on - strand at 929.290 kb on + strand, within yihL at 929.291 kb on - strand, within yihL at 929.324 kb on + strand, within yihL at 929.324 kb on + strand, within yihL at 929.325 kb on - strand, within yihL at 929.394 kb on - strand, within yihL at 929.469 kb on + strand, within yihL at 929.469 kb on + strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.470 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.472 kb on - strand, within yihL at 929.493 kb on + strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.494 kb on - strand, within yihL at 929.679 kb on + strand, within yihL at 929.710 kb on - strand, within yihL at 929.772 kb on + strand, within yihL at 929.772 kb on + strand, within yihL at 929.773 kb on - strand, within yihL at 929.773 kb on - strand, within yihL at 929.778 kb on + strand, within yihL at 929.881 kb on + strand at 929.881 kb on + strand at 929.910 kb on - strand at 929.942 kb on + strand at 929.943 kb on - strand at 929.948 kb on + strand at 929.948 kb on + strand at 929.949 kb on - strand at 929.969 kb on + strand at 929.970 kb on - strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.977 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.991 kb on + strand at 929.992 kb on - strand at 929.992 kb on - strand at 930.010 kb on + strand at 930.010 kb on + strand at 930.011 kb on - strand at 930.019 kb on - strand at 930.031 kb on - strand at 930.031 kb on - strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.032 kb on + strand at 930.033 kb on - strand at 930.041 kb on + strand at 930.104 kb on - strand at 930.109 kb on + strand at 930.110 kb on - strand at 930.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 927,223 - yihN MCAODC_04570 0.30 -0.6 927,230 + yihN MCAODC_04570 0.31 -1.1 927,230 + yihN MCAODC_04570 0.31 -0.5 927,230 + yihN MCAODC_04570 0.31 -0.1 927,231 - yihN MCAODC_04570 0.31 -1.5 927,235 + yihN MCAODC_04570 0.31 +0.8 927,235 + yihN MCAODC_04570 0.31 -0.2 927,235 + yihN MCAODC_04570 0.31 -0.2 927,235 + yihN MCAODC_04570 0.31 -1.9 927,235 + yihN MCAODC_04570 0.31 +0.4 927,236 - yihN MCAODC_04570 0.31 -2.9 927,236 - yihN MCAODC_04570 0.31 +0.3 927,236 - yihN MCAODC_04570 0.31 -2.2 927,236 - yihN MCAODC_04570 0.31 -0.5 927,236 - yihN MCAODC_04570 0.31 -0.5 927,239 + yihN MCAODC_04570 0.32 +2.0 927,239 + yihN MCAODC_04570 0.32 -0.3 927,240 - yihN MCAODC_04570 0.32 +1.2 927,311 + yihN MCAODC_04570 0.37 -1.0 927,330 - yihN MCAODC_04570 0.39 -0.3 927,355 + yihN MCAODC_04570 0.41 -1.2 927,355 + yihN MCAODC_04570 0.41 +0.3 927,355 + yihN MCAODC_04570 0.41 +0.0 927,355 + yihN MCAODC_04570 0.41 +3.6 927,356 - yihN MCAODC_04570 0.41 +0.2 927,359 + yihN MCAODC_04570 0.41 -0.4 927,359 + yihN MCAODC_04570 0.41 +0.0 927,360 - yihN MCAODC_04570 0.41 -0.5 927,360 - yihN MCAODC_04570 0.41 +0.1 927,360 - yihN MCAODC_04570 0.41 +2.0 927,401 + yihN MCAODC_04570 0.44 +0.4 927,435 + yihN MCAODC_04570 0.47 -0.2 927,445 - yihN MCAODC_04570 0.48 -0.5 927,471 + yihN MCAODC_04570 0.50 -2.1 927,553 - yihN MCAODC_04570 0.56 -1.1 927,555 + yihN MCAODC_04570 0.57 -0.9 927,584 + yihN MCAODC_04570 0.59 -0.1 927,585 - yihN MCAODC_04570 0.59 -1.2 927,603 + yihN MCAODC_04570 0.60 -0.3 927,611 - yihN MCAODC_04570 0.61 +0.0 927,613 + yihN MCAODC_04570 0.61 -0.3 927,614 - yihN MCAODC_04570 0.61 -2.1 927,614 - yihN MCAODC_04570 0.61 +0.9 927,633 + yihN MCAODC_04570 0.63 +1.3 927,633 + yihN MCAODC_04570 0.63 -1.3 927,634 - yihN MCAODC_04570 0.63 -2.3 927,780 + yihN MCAODC_04570 0.74 -0.6 927,781 - yihN MCAODC_04570 0.74 +0.2 927,818 + yihN MCAODC_04570 0.77 +0.8 927,840 - yihN MCAODC_04570 0.79 +0.6 927,884 + yihN MCAODC_04570 0.83 -0.5 927,895 + yihN MCAODC_04570 0.83 -1.6 927,960 + yihN MCAODC_04570 0.89 -0.6 927,960 + yihN MCAODC_04570 0.89 +0.7 927,961 - yihN MCAODC_04570 0.89 +0.1 927,966 + yihN MCAODC_04570 0.89 -1.2 928,036 + +3.0 928,075 - -0.2 928,148 + -0.9 928,179 + -0.4 928,179 + +0.7 928,251 + -0.4 928,373 + yihM MCAODC_04575 0.17 -0.7 928,373 + yihM MCAODC_04575 0.17 +0.1 928,409 - yihM MCAODC_04575 0.21 -1.2 928,409 - yihM MCAODC_04575 0.21 +0.4 928,411 + yihM MCAODC_04575 0.21 +2.0 928,412 - yihM MCAODC_04575 0.21 -1.2 928,436 - yihM MCAODC_04575 0.23 +0.0 928,472 + yihM MCAODC_04575 0.27 +0.3 928,473 - yihM MCAODC_04575 0.27 -3.1 928,473 - yihM MCAODC_04575 0.27 +0.9 928,473 - yihM MCAODC_04575 0.27 +1.4 928,483 - yihM MCAODC_04575 0.28 +2.0 928,485 + yihM MCAODC_04575 0.28 -1.7 928,485 + yihM MCAODC_04575 0.28 +1.1 928,502 + yihM MCAODC_04575 0.30 +1.5 928,502 + yihM MCAODC_04575 0.30 -0.5 928,521 - yihM MCAODC_04575 0.32 +1.0 928,529 + yihM MCAODC_04575 0.33 -0.1 928,529 + yihM MCAODC_04575 0.33 +0.7 928,587 - yihM MCAODC_04575 0.39 -0.1 928,720 - yihM MCAODC_04575 0.52 +0.4 928,765 + yihM MCAODC_04575 0.57 +0.4 928,810 - yihM MCAODC_04575 0.62 -0.4 928,810 - yihM MCAODC_04575 0.62 -1.2 928,810 - yihM MCAODC_04575 0.62 +0.3 928,895 + yihM MCAODC_04575 0.70 -1.6 928,896 - yihM MCAODC_04575 0.70 -0.1 928,931 + yihM MCAODC_04575 0.74 +0.2 928,932 - yihM MCAODC_04575 0.74 +2.0 929,040 + yihM MCAODC_04575 0.85 +0.1 929,040 + yihM MCAODC_04575 0.85 +1.0 929,125 - -1.0 929,176 - +0.6 929,234 + -1.7 929,242 - +0.4 929,242 - -0.8 929,243 + +0.4 929,257 - +0.4 929,290 + yihL MCAODC_04580 0.14 +0.0 929,291 - yihL MCAODC_04580 0.14 +0.9 929,324 + yihL MCAODC_04580 0.18 -0.8 929,324 + yihL MCAODC_04580 0.18 -0.8 929,325 - yihL MCAODC_04580 0.18 +0.1 929,394 - yihL MCAODC_04580 0.28 -0.4 929,469 + yihL MCAODC_04580 0.39 -0.2 929,469 + yihL MCAODC_04580 0.39 +0.4 929,470 - yihL MCAODC_04580 0.39 -0.6 929,470 - yihL MCAODC_04580 0.39 -0.6 929,470 - yihL MCAODC_04580 0.39 -1.0 929,470 - yihL MCAODC_04580 0.39 -0.9 929,472 - yihL MCAODC_04580 0.39 -2.8 929,472 - yihL MCAODC_04580 0.39 +1.1 929,493 + yihL MCAODC_04580 0.42 -1.1 929,494 - yihL MCAODC_04580 0.42 +0.1 929,494 - yihL MCAODC_04580 0.42 +0.4 929,494 - yihL MCAODC_04580 0.42 -0.9 929,494 - yihL MCAODC_04580 0.42 +0.6 929,679 + yihL MCAODC_04580 0.68 -1.0 929,710 - yihL MCAODC_04580 0.73 -0.9 929,772 + yihL MCAODC_04580 0.81 +1.0 929,772 + yihL MCAODC_04580 0.81 -0.2 929,773 - yihL MCAODC_04580 0.81 -0.9 929,773 - yihL MCAODC_04580 0.81 -1.7 929,778 + yihL MCAODC_04580 0.82 +0.6 929,881 + -0.2 929,881 + -0.7 929,910 - +0.3 929,942 + +1.2 929,943 - +1.3 929,948 + -2.5 929,948 + +2.7 929,949 - +0.7 929,969 + +0.6 929,970 - -2.2 929,977 + -1.0 929,977 + -0.3 929,977 + -0.5 929,991 + -0.2 929,991 + +0.0 929,991 + -0.4 929,992 - +2.6 929,992 - -0.7 930,010 + +0.2 930,010 + +0.2 930,011 - -1.9 930,019 - +0.8 930,031 - +0.4 930,031 - +1.0 930,032 + -2.1 930,032 + -0.5 930,032 + +0.7 930,033 - +0.9 930,041 + -0.9 930,104 - -0.8 930,109 + -1.2 930,110 - -0.1 930,180 + +0.0
Or see this region's nucleotide sequence