Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcA and creD are separated by 59 nucleotides creD and creC are separated by 57 nucleotides
MCAODC_01640: arcA - two-component system response regulator ArcA, at 318,536 to 319,252
arcA
MCAODC_01645: creD - cell envelope integrity protein CreD, at 319,312 to 320,664
creD
MCAODC_01650: creC - two-component system sensor histidine kinase CreC, at 320,722 to 322,146
creC
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 318.380 kb on + strand at 318.380 kb on + strand at 318.380 kb on + strand at 318.380 kb on + strand at 318.425 kb on + strand at 318.425 kb on + strand at 318.425 kb on + strand at 318.429 kb on + strand at 318.434 kb on + strand at 319.251 kb on - strand at 319.251 kb on - strand at 319.313 kb on + strand at 319.314 kb on - strand at 319.324 kb on - strand at 319.345 kb on - strand at 319.386 kb on - strand at 319.386 kb on - strand at 319.386 kb on - strand at 319.386 kb on - strand at 319.386 kb on - strand at 319.396 kb on - strand at 319.398 kb on + strand at 319.398 kb on + strand at 319.399 kb on - strand at 319.399 kb on - strand at 319.399 kb on - strand at 319.566 kb on - strand, within creD at 319.688 kb on + strand, within creD at 319.688 kb on + strand, within creD at 319.689 kb on - strand, within creD at 319.702 kb on + strand, within creD at 319.703 kb on - strand, within creD at 319.703 kb on - strand, within creD at 319.772 kb on + strand, within creD at 319.793 kb on - strand, within creD at 319.800 kb on - strand, within creD at 319.894 kb on - strand, within creD at 319.894 kb on - strand, within creD at 319.939 kb on - strand, within creD at 319.939 kb on - strand, within creD at 320.013 kb on + strand, within creD at 320.016 kb on + strand, within creD at 320.017 kb on - strand, within creD at 320.071 kb on - strand, within creD at 320.163 kb on + strand, within creD at 320.229 kb on + strand, within creD at 320.239 kb on - strand, within creD at 320.239 kb on - strand, within creD at 320.239 kb on - strand, within creD at 320.281 kb on - strand, within creD at 320.314 kb on + strand, within creD at 320.342 kb on + strand, within creD at 320.342 kb on + strand, within creD at 320.415 kb on + strand, within creD at 320.415 kb on + strand, within creD at 320.443 kb on - strand, within creD at 320.460 kb on + strand, within creD at 320.460 kb on + strand, within creD at 320.460 kb on + strand, within creD at 320.461 kb on - strand, within creD at 320.462 kb on + strand, within creD at 320.462 kb on + strand, within creD at 320.462 kb on + strand, within creD at 320.462 kb on + strand, within creD at 320.462 kb on + strand, within creD at 320.463 kb on - strand, within creD at 320.463 kb on - strand, within creD at 320.487 kb on + strand, within creD at 320.487 kb on + strand, within creD at 320.487 kb on + strand, within creD at 320.487 kb on + strand, within creD at 320.488 kb on - strand, within creD at 320.488 kb on - strand, within creD at 320.615 kb on - strand at 320.615 kb on - strand at 320.615 kb on - strand at 320.664 kb on + strand at 320.664 kb on + strand at 320.664 kb on + strand at 320.665 kb on - strand at 320.693 kb on + strand at 320.693 kb on + strand at 320.702 kb on + strand at 320.702 kb on + strand at 320.702 kb on + strand at 320.702 kb on + strand at 320.723 kb on + strand at 320.724 kb on - strand at 320.724 kb on - strand at 320.876 kb on + strand, within creC at 320.892 kb on + strand, within creC at 321.078 kb on + strand, within creC at 321.079 kb on - strand, within creC at 321.084 kb on + strand, within creC at 321.084 kb on + strand, within creC at 321.084 kb on + strand, within creC at 321.084 kb on + strand, within creC at 321.085 kb on - strand, within creC at 321.085 kb on - strand, within creC at 321.085 kb on - strand, within creC at 321.085 kb on - strand, within creC at 321.085 kb on - strand, within creC at 321.148 kb on + strand, within creC at 321.149 kb on - strand, within creC at 321.212 kb on - strand, within creC at 321.214 kb on + strand, within creC at 321.214 kb on + strand, within creC at 321.215 kb on - strand, within creC at 321.219 kb on + strand, within creC at 321.268 kb on - strand, within creC at 321.346 kb on + strand, within creC at 321.346 kb on + strand, within creC at 321.346 kb on + strand, within creC at 321.366 kb on - strand, within creC at 321.371 kb on + strand, within creC at 321.371 kb on + strand, within creC at 321.371 kb on + strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.381 kb on + strand, within creC at 321.381 kb on + strand, within creC at 321.381 kb on + strand, within creC at 321.382 kb on - strand, within creC at 321.382 kb on - strand, within creC at 321.383 kb on + strand, within creC at 321.384 kb on - strand, within creC at 321.411 kb on + strand, within creC at 321.412 kb on - strand, within creC at 321.477 kb on + strand, within creC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 318,380 + +0.2 318,380 + -0.8 318,380 + +0.7 318,380 + -0.7 318,425 + -1.4 318,425 + +0.5 318,425 + -1.9 318,429 + -0.6 318,434 + +0.0 319,251 - -0.8 319,251 - -0.5 319,313 + -0.3 319,314 - -1.2 319,324 - +0.2 319,345 - -1.4 319,386 - -0.4 319,386 - -0.2 319,386 - +0.3 319,386 - -0.4 319,386 - -0.1 319,396 - +0.3 319,398 + +0.7 319,398 + +0.1 319,399 - +0.9 319,399 - -0.7 319,399 - +0.2 319,566 - creD MCAODC_01645 0.19 +0.1 319,688 + creD MCAODC_01645 0.28 -1.1 319,688 + creD MCAODC_01645 0.28 -0.2 319,689 - creD MCAODC_01645 0.28 +0.4 319,702 + creD MCAODC_01645 0.29 +0.1 319,703 - creD MCAODC_01645 0.29 -1.4 319,703 - creD MCAODC_01645 0.29 -0.1 319,772 + creD MCAODC_01645 0.34 -0.5 319,793 - creD MCAODC_01645 0.36 -1.1 319,800 - creD MCAODC_01645 0.36 -1.6 319,894 - creD MCAODC_01645 0.43 -0.9 319,894 - creD MCAODC_01645 0.43 +0.8 319,939 - creD MCAODC_01645 0.46 -0.6 319,939 - creD MCAODC_01645 0.46 +1.9 320,013 + creD MCAODC_01645 0.52 -0.1 320,016 + creD MCAODC_01645 0.52 +0.4 320,017 - creD MCAODC_01645 0.52 -1.1 320,071 - creD MCAODC_01645 0.56 -0.7 320,163 + creD MCAODC_01645 0.63 +2.9 320,229 + creD MCAODC_01645 0.68 +2.6 320,239 - creD MCAODC_01645 0.69 -2.4 320,239 - creD MCAODC_01645 0.69 -0.4 320,239 - creD MCAODC_01645 0.69 +0.5 320,281 - creD MCAODC_01645 0.72 -0.4 320,314 + creD MCAODC_01645 0.74 +0.5 320,342 + creD MCAODC_01645 0.76 +1.3 320,342 + creD MCAODC_01645 0.76 +0.9 320,415 + creD MCAODC_01645 0.82 +0.5 320,415 + creD MCAODC_01645 0.82 -0.9 320,443 - creD MCAODC_01645 0.84 -1.3 320,460 + creD MCAODC_01645 0.85 +0.2 320,460 + creD MCAODC_01645 0.85 -1.1 320,460 + creD MCAODC_01645 0.85 -0.2 320,461 - creD MCAODC_01645 0.85 -0.1 320,462 + creD MCAODC_01645 0.85 +0.2 320,462 + creD MCAODC_01645 0.85 +0.2 320,462 + creD MCAODC_01645 0.85 -0.0 320,462 + creD MCAODC_01645 0.85 +0.8 320,462 + creD MCAODC_01645 0.85 +0.7 320,463 - creD MCAODC_01645 0.85 -0.3 320,463 - creD MCAODC_01645 0.85 -1.0 320,487 + creD MCAODC_01645 0.87 -0.2 320,487 + creD MCAODC_01645 0.87 +0.1 320,487 + creD MCAODC_01645 0.87 -1.5 320,487 + creD MCAODC_01645 0.87 +0.4 320,488 - creD MCAODC_01645 0.87 +0.9 320,488 - creD MCAODC_01645 0.87 -0.9 320,615 - -1.2 320,615 - +0.5 320,615 - +0.0 320,664 + +0.2 320,664 + -0.6 320,664 + +0.3 320,665 - -0.3 320,693 + -0.3 320,693 + -0.4 320,702 + +0.7 320,702 + +0.2 320,702 + +0.6 320,702 + +0.3 320,723 + -0.2 320,724 - +1.0 320,724 - +0.3 320,876 + creC MCAODC_01650 0.11 +0.9 320,892 + creC MCAODC_01650 0.12 +0.7 321,078 + creC MCAODC_01650 0.25 -0.0 321,079 - creC MCAODC_01650 0.25 -0.3 321,084 + creC MCAODC_01650 0.25 +1.9 321,084 + creC MCAODC_01650 0.25 -1.4 321,084 + creC MCAODC_01650 0.25 +2.9 321,084 + creC MCAODC_01650 0.25 +0.7 321,085 - creC MCAODC_01650 0.25 +0.0 321,085 - creC MCAODC_01650 0.25 +0.4 321,085 - creC MCAODC_01650 0.25 -0.7 321,085 - creC MCAODC_01650 0.25 -1.2 321,085 - creC MCAODC_01650 0.25 -0.0 321,148 + creC MCAODC_01650 0.30 +0.5 321,149 - creC MCAODC_01650 0.30 +0.5 321,212 - creC MCAODC_01650 0.34 +0.6 321,214 + creC MCAODC_01650 0.35 +0.9 321,214 + creC MCAODC_01650 0.35 +0.6 321,215 - creC MCAODC_01650 0.35 +0.6 321,219 + creC MCAODC_01650 0.35 -0.8 321,268 - creC MCAODC_01650 0.38 -0.0 321,346 + creC MCAODC_01650 0.44 -0.1 321,346 + creC MCAODC_01650 0.44 +0.3 321,346 + creC MCAODC_01650 0.44 +2.1 321,366 - creC MCAODC_01650 0.45 +0.2 321,371 + creC MCAODC_01650 0.46 -1.1 321,371 + creC MCAODC_01650 0.46 +0.4 321,371 + creC MCAODC_01650 0.46 -0.7 321,372 - creC MCAODC_01650 0.46 +0.1 321,372 - creC MCAODC_01650 0.46 -0.2 321,372 - creC MCAODC_01650 0.46 -0.7 321,372 - creC MCAODC_01650 0.46 +0.5 321,372 - creC MCAODC_01650 0.46 +0.1 321,381 + creC MCAODC_01650 0.46 +0.3 321,381 + creC MCAODC_01650 0.46 -1.3 321,381 + creC MCAODC_01650 0.46 +1.3 321,382 - creC MCAODC_01650 0.46 +0.5 321,382 - creC MCAODC_01650 0.46 +0.0 321,383 + creC MCAODC_01650 0.46 +0.0 321,384 - creC MCAODC_01650 0.46 -0.4 321,411 + creC MCAODC_01650 0.48 +0.2 321,412 - creC MCAODC_01650 0.48 -0.4 321,477 + creC MCAODC_01650 0.53 -0.1
Or see this region's nucleotide sequence