Strain Fitness in Escherichia coli ECRC101 around MCAODC_01420
Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bas14 |
---|---|---|---|---|---|
remove | |||||
271,439 | - | caiT | MCAODC_01415 | 0.39 | -1.9 |
271,439 | - | caiT | MCAODC_01415 | 0.39 | +2.3 |
271,506 | + | caiT | MCAODC_01415 | 0.43 | -0.0 |
271,506 | + | caiT | MCAODC_01415 | 0.43 | +0.7 |
271,507 | - | caiT | MCAODC_01415 | 0.43 | -2.4 |
271,507 | - | caiT | MCAODC_01415 | 0.43 | +0.1 |
271,507 | - | caiT | MCAODC_01415 | 0.43 | +0.9 |
271,507 | - | caiT | MCAODC_01415 | 0.43 | +1.3 |
271,507 | - | caiT | MCAODC_01415 | 0.43 | +0.1 |
271,533 | + | caiT | MCAODC_01415 | 0.45 | -0.2 |
271,551 | + | caiT | MCAODC_01415 | 0.46 | +0.1 |
271,552 | - | caiT | MCAODC_01415 | 0.46 | +0.9 |
271,552 | - | caiT | MCAODC_01415 | 0.46 | +0.7 |
271,560 | + | caiT | MCAODC_01415 | 0.47 | -0.8 |
271,561 | - | caiT | MCAODC_01415 | 0.47 | -0.9 |
271,572 | + | caiT | MCAODC_01415 | 0.47 | +0.1 |
271,620 | + | caiT | MCAODC_01415 | 0.51 | +0.1 |
271,621 | - | caiT | MCAODC_01415 | 0.51 | +1.9 |
271,638 | + | caiT | MCAODC_01415 | 0.52 | -0.2 |
271,639 | - | caiT | MCAODC_01415 | 0.52 | +0.8 |
271,639 | - | caiT | MCAODC_01415 | 0.52 | +0.3 |
271,642 | + | caiT | MCAODC_01415 | 0.52 | -1.9 |
271,643 | - | caiT | MCAODC_01415 | 0.52 | +0.3 |
271,643 | - | caiT | MCAODC_01415 | 0.52 | +0.3 |
271,706 | - | caiT | MCAODC_01415 | 0.56 | -0.3 |
271,706 | - | caiT | MCAODC_01415 | 0.56 | +0.3 |
271,738 | + | caiT | MCAODC_01415 | 0.58 | +0.2 |
271,738 | + | caiT | MCAODC_01415 | 0.58 | +0.9 |
271,739 | - | caiT | MCAODC_01415 | 0.58 | -0.4 |
271,759 | + | caiT | MCAODC_01415 | 0.60 | +1.9 |
271,759 | + | caiT | MCAODC_01415 | 0.60 | +2.9 |
271,760 | - | caiT | MCAODC_01415 | 0.60 | -0.0 |
271,762 | - | caiT | MCAODC_01415 | 0.60 | -0.9 |
271,810 | + | caiT | MCAODC_01415 | 0.63 | +0.1 |
271,811 | - | caiT | MCAODC_01415 | 0.63 | -1.1 |
271,831 | + | caiT | MCAODC_01415 | 0.65 | +2.9 |
271,832 | - | caiT | MCAODC_01415 | 0.65 | -0.5 |
271,878 | + | caiT | MCAODC_01415 | 0.68 | +1.3 |
271,878 | + | caiT | MCAODC_01415 | 0.68 | +0.4 |
271,946 | + | caiT | MCAODC_01415 | 0.72 | +0.6 |
271,946 | + | caiT | MCAODC_01415 | 0.72 | -0.4 |
271,947 | - | caiT | MCAODC_01415 | 0.72 | +0.5 |
271,956 | + | caiT | MCAODC_01415 | 0.73 | -0.6 |
271,957 | - | caiT | MCAODC_01415 | 0.73 | +0.7 |
271,974 | - | caiT | MCAODC_01415 | 0.74 | +0.6 |
271,977 | + | caiT | MCAODC_01415 | 0.74 | -0.4 |
272,014 | + | caiT | MCAODC_01415 | 0.77 | -0.4 |
272,134 | + | caiT | MCAODC_01415 | 0.85 | -1.3 |
272,134 | + | caiT | MCAODC_01415 | 0.85 | +1.5 |
272,134 | + | caiT | MCAODC_01415 | 0.85 | -0.1 |
272,135 | - | caiT | MCAODC_01415 | 0.85 | +1.5 |
272,135 | - | caiT | MCAODC_01415 | 0.85 | -0.1 |
272,135 | - | caiT | MCAODC_01415 | 0.85 | +1.6 |
272,135 | - | caiT | MCAODC_01415 | 0.85 | +1.0 |
272,136 | + | caiT | MCAODC_01415 | 0.85 | -0.4 |
272,136 | + | caiT | MCAODC_01415 | 0.85 | +0.7 |
272,137 | - | caiT | MCAODC_01415 | 0.85 | -0.3 |
272,137 | - | caiT | MCAODC_01415 | 0.85 | +0.3 |
272,232 | + | -2.4 | |||
272,317 | - | +0.9 | |||
272,317 | - | -2.6 | |||
272,334 | + | -0.9 | |||
272,411 | + | -0.6 | |||
272,479 | + | +0.4 | |||
272,509 | + | +0.0 | |||
272,601 | + | caiA | MCAODC_01420 | 0.18 | +1.2 |
272,601 | + | caiA | MCAODC_01420 | 0.18 | +0.6 |
272,601 | + | caiA | MCAODC_01420 | 0.18 | +0.1 |
272,602 | - | caiA | MCAODC_01420 | 0.18 | +1.9 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | +0.2 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | -0.3 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | -0.3 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | -1.7 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | +1.6 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | -0.9 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | +0.8 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | +2.2 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | -0.2 |
272,650 | + | caiA | MCAODC_01420 | 0.22 | +0.5 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -1.7 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -1.4 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | +0.1 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | +0.0 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -0.5 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -0.4 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | +2.6 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -0.4 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -0.4 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | +0.7 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | -2.6 |
272,651 | - | caiA | MCAODC_01420 | 0.22 | +0.9 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +0.3 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +0.2 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | -2.3 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +1.3 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +1.0 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | -0.4 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +0.5 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | -0.7 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +0.3 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | +0.1 |
272,654 | + | caiA | MCAODC_01420 | 0.22 | -1.3 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | -1.1 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | -0.2 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | -0.1 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | +0.6 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | -0.2 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | +0.9 |
272,655 | - | caiA | MCAODC_01420 | 0.22 | -1.3 |
272,659 | + | caiA | MCAODC_01420 | 0.23 | +1.0 |
272,682 | + | caiA | MCAODC_01420 | 0.25 | +0.3 |
272,682 | + | caiA | MCAODC_01420 | 0.25 | -0.4 |
272,682 | + | caiA | MCAODC_01420 | 0.25 | -0.4 |
272,725 | - | caiA | MCAODC_01420 | 0.29 | -0.4 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | +0.1 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | +0.4 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | -0.9 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | -0.4 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | -0.4 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | +0.9 |
272,815 | + | caiA | MCAODC_01420 | 0.36 | +1.9 |
272,816 | - | caiA | MCAODC_01420 | 0.37 | -1.1 |
272,816 | - | caiA | MCAODC_01420 | 0.37 | -0.0 |
272,816 | - | caiA | MCAODC_01420 | 0.37 | -0.9 |
272,816 | - | caiA | MCAODC_01420 | 0.37 | -0.9 |
272,818 | - | caiA | MCAODC_01420 | 0.37 | -1.1 |
272,839 | + | caiA | MCAODC_01420 | 0.39 | +1.3 |
272,839 | + | caiA | MCAODC_01420 | 0.39 | -0.7 |
272,839 | + | caiA | MCAODC_01420 | 0.39 | -0.5 |
272,840 | - | caiA | MCAODC_01420 | 0.39 | -0.1 |
272,844 | + | caiA | MCAODC_01420 | 0.39 | -1.3 |
272,845 | - | caiA | MCAODC_01420 | 0.39 | -0.1 |
272,845 | - | caiA | MCAODC_01420 | 0.39 | +0.5 |
272,853 | + | caiA | MCAODC_01420 | 0.40 | -0.2 |
272,853 | + | caiA | MCAODC_01420 | 0.40 | -0.9 |
272,853 | + | caiA | MCAODC_01420 | 0.40 | -1.8 |
272,853 | + | caiA | MCAODC_01420 | 0.40 | -1.0 |
272,854 | - | caiA | MCAODC_01420 | 0.40 | -0.7 |
272,854 | - | caiA | MCAODC_01420 | 0.40 | +0.9 |
272,854 | - | caiA | MCAODC_01420 | 0.40 | -1.3 |
272,863 | - | caiA | MCAODC_01420 | 0.41 | -0.6 |
272,863 | - | caiA | MCAODC_01420 | 0.41 | +1.5 |
272,863 | - | caiA | MCAODC_01420 | 0.41 | -1.3 |
272,866 | - | caiA | MCAODC_01420 | 0.41 | -0.7 |
272,866 | - | caiA | MCAODC_01420 | 0.41 | -1.1 |
272,872 | - | caiA | MCAODC_01420 | 0.41 | -2.1 |
272,887 | + | caiA | MCAODC_01420 | 0.43 | +0.5 |
272,887 | + | caiA | MCAODC_01420 | 0.43 | -0.1 |
272,888 | - | caiA | MCAODC_01420 | 0.43 | -0.4 |
272,888 | - | caiA | MCAODC_01420 | 0.43 | -1.0 |
272,888 | - | caiA | MCAODC_01420 | 0.43 | +1.0 |
272,888 | - | caiA | MCAODC_01420 | 0.43 | +1.1 |
272,955 | + | caiA | MCAODC_01420 | 0.49 | -0.7 |
272,955 | + | caiA | MCAODC_01420 | 0.49 | -0.4 |
272,956 | - | caiA | MCAODC_01420 | 0.49 | +1.1 |
272,956 | - | caiA | MCAODC_01420 | 0.49 | +0.3 |
273,013 | - | caiA | MCAODC_01420 | 0.54 | +0.3 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | -0.0 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | +0.8 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | -1.7 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | -0.3 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | -0.2 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | +0.9 |
273,142 | + | caiA | MCAODC_01420 | 0.65 | -0.6 |
273,143 | - | caiA | MCAODC_01420 | 0.65 | +0.3 |
273,143 | - | caiA | MCAODC_01420 | 0.65 | +0.3 |
273,213 | + | caiA | MCAODC_01420 | 0.71 | -0.5 |
273,266 | + | caiA | MCAODC_01420 | 0.76 | +1.9 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | +0.0 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | +0.2 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | +0.9 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | -0.1 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | -0.2 |
273,289 | + | caiA | MCAODC_01420 | 0.78 | +0.5 |
273,290 | - | caiA | MCAODC_01420 | 0.78 | -1.4 |
273,353 | - | caiA | MCAODC_01420 | 0.84 | -0.6 |
273,464 | + | -0.7 | |||
273,533 | - | -0.2 | |||
273,576 | + | -0.6 | |||
273,576 | + | -0.0 | |||
273,619 | + | -0.5 | |||
273,644 | + | -0.4 | |||
273,664 | + | -1.2 | |||
273,664 | + | -0.4 | |||
273,664 | + | -0.5 | |||
273,665 | - | +0.8 | |||
273,667 | + | +1.9 | |||
273,668 | - | +0.8 | |||
273,668 | - | +0.1 | |||
273,679 | + | +0.7 | |||
273,680 | - | +0.2 | |||
273,680 | - | -0.7 | |||
273,680 | - | +1.1 | |||
273,680 | - | -0.4 | |||
273,788 | + | +1.9 | |||
273,788 | + | -0.1 | |||
273,788 | + | -0.7 | |||
273,789 | - | -0.8 | |||
273,884 | + | caiB | MCAODC_01425 | 0.18 | -0.0 |
273,923 | - | caiB | MCAODC_01425 | 0.21 | +0.1 |
273,938 | + | caiB | MCAODC_01425 | 0.22 | +0.9 |
273,997 | + | caiB | MCAODC_01425 | 0.27 | -1.0 |
273,997 | + | caiB | MCAODC_01425 | 0.27 | +0.9 |
273,997 | + | caiB | MCAODC_01425 | 0.27 | -1.4 |
273,998 | - | caiB | MCAODC_01425 | 0.27 | +1.0 |
273,998 | - | caiB | MCAODC_01425 | 0.27 | +0.6 |
273,998 | - | caiB | MCAODC_01425 | 0.27 | -1.3 |
273,998 | - | caiB | MCAODC_01425 | 0.27 | +1.1 |
273,998 | - | caiB | MCAODC_01425 | 0.27 | +0.2 |
274,068 | + | caiB | MCAODC_01425 | 0.33 | +0.3 |
274,069 | - | caiB | MCAODC_01425 | 0.33 | -0.2 |
274,087 | - | caiB | MCAODC_01425 | 0.34 | -0.1 |
274,087 | - | caiB | MCAODC_01425 | 0.34 | -0.4 |
274,087 | - | caiB | MCAODC_01425 | 0.34 | -0.4 |
274,087 | - | caiB | MCAODC_01425 | 0.34 | -0.2 |
274,087 | - | caiB | MCAODC_01425 | 0.34 | -1.5 |
274,088 | + | caiB | MCAODC_01425 | 0.34 | -1.4 |
274,089 | - | caiB | MCAODC_01425 | 0.34 | -0.7 |
274,164 | + | caiB | MCAODC_01425 | 0.41 | -1.3 |
274,177 | - | caiB | MCAODC_01425 | 0.42 | -2.9 |
274,223 | + | caiB | MCAODC_01425 | 0.45 | -0.4 |
274,224 | - | caiB | MCAODC_01425 | 0.46 | -0.6 |
274,254 | - | caiB | MCAODC_01425 | 0.48 | -0.7 |
274,254 | - | caiB | MCAODC_01425 | 0.48 | -0.3 |
274,269 | + | caiB | MCAODC_01425 | 0.49 | +1.5 |
274,269 | + | caiB | MCAODC_01425 | 0.49 | +0.4 |
274,269 | + | caiB | MCAODC_01425 | 0.49 | -1.3 |
274,270 | - | caiB | MCAODC_01425 | 0.49 | -2.4 |
274,270 | - | caiB | MCAODC_01425 | 0.49 | +2.9 |
274,270 | - | caiB | MCAODC_01425 | 0.49 | -0.8 |
274,270 | - | caiB | MCAODC_01425 | 0.49 | +0.2 |
274,296 | + | caiB | MCAODC_01425 | 0.51 | +0.0 |
274,312 | - | caiB | MCAODC_01425 | 0.53 | +0.1 |
274,352 | + | caiB | MCAODC_01425 | 0.56 | +1.1 |
274,353 | - | caiB | MCAODC_01425 | 0.56 | -1.4 |
274,362 | + | caiB | MCAODC_01425 | 0.57 | -0.0 |
274,363 | - | caiB | MCAODC_01425 | 0.57 | -0.4 |
274,363 | - | caiB | MCAODC_01425 | 0.57 | -0.4 |
274,363 | - | caiB | MCAODC_01425 | 0.57 | +0.9 |
274,366 | - | caiB | MCAODC_01425 | 0.57 | -0.1 |
274,366 | - | caiB | MCAODC_01425 | 0.57 | +0.6 |
274,383 | + | caiB | MCAODC_01425 | 0.59 | -0.4 |
274,384 | - | caiB | MCAODC_01425 | 0.59 | -0.1 |
274,385 | + | caiB | MCAODC_01425 | 0.59 | -0.4 |
274,385 | + | caiB | MCAODC_01425 | 0.59 | -0.4 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | +0.1 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | -1.6 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | +1.3 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | +0.9 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | +1.1 |
274,386 | - | caiB | MCAODC_01425 | 0.59 | -0.4 |
274,448 | + | caiB | MCAODC_01425 | 0.64 | +0.3 |
274,471 | + | caiB | MCAODC_01425 | 0.66 | -0.4 |
274,508 | + | caiB | MCAODC_01425 | 0.69 | +0.7 |
274,509 | - | caiB | MCAODC_01425 | 0.69 | +1.9 |
274,509 | - | caiB | MCAODC_01425 | 0.69 | +0.3 |
274,531 | - | caiB | MCAODC_01425 | 0.71 | +0.2 |
Or see this region's nucleotide sequence