Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cra and fruL are separated by 81 nucleotides fruL and ilvN are separated by 11 nucleotides ilvN and ilvI are separated by 2 nucleotides
MCAODC_01200: cra - catabolite repressor/activator, at 223,573 to 224,577
cra
MCAODC_01205: fruL - Putative fruR/shl operon leader peptide, at 224,659 to 224,745
fruL
MCAODC_01210: ilvN - acetolactate synthase small subunit, at 224,757 to 225,248
ilvN
MCAODC_01215: ilvI - acetolactate synthase 3 large subunit, at 225,251 to 226,975
ilvI
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 223.792 kb on - strand, within cra at 223.792 kb on - strand, within cra at 223.792 kb on - strand, within cra at 223.804 kb on + strand, within cra at 223.805 kb on - strand, within cra at 223.919 kb on + strand, within cra at 223.920 kb on - strand, within cra at 224.027 kb on + strand, within cra at 224.027 kb on + strand, within cra at 224.027 kb on + strand, within cra at 224.052 kb on + strand, within cra at 224.053 kb on - strand, within cra at 224.053 kb on - strand, within cra at 224.053 kb on - strand, within cra at 224.053 kb on - strand, within cra at 224.056 kb on + strand, within cra at 224.056 kb on + strand, within cra at 224.057 kb on - strand, within cra at 224.109 kb on + strand, within cra at 224.214 kb on + strand, within cra at 224.237 kb on - strand, within cra at 224.303 kb on + strand, within cra at 224.333 kb on + strand, within cra at 224.334 kb on - strand, within cra at 224.334 kb on - strand, within cra at 224.337 kb on + strand, within cra at 224.352 kb on - strand, within cra at 224.388 kb on + strand, within cra at 224.388 kb on + strand, within cra at 224.388 kb on + strand, within cra at 224.389 kb on - strand, within cra at 224.438 kb on + strand, within cra at 224.438 kb on + strand, within cra at 224.439 kb on - strand, within cra at 224.439 kb on - strand, within cra at 224.495 kb on + strand at 224.495 kb on + strand at 224.517 kb on + strand at 224.517 kb on + strand at 224.518 kb on - strand at 224.518 kb on - strand at 224.522 kb on + strand at 224.522 kb on + strand at 224.522 kb on + strand at 224.523 kb on - strand at 224.523 kb on - strand at 224.523 kb on - strand at 224.523 kb on - strand at 224.593 kb on - strand at 224.593 kb on - strand at 224.646 kb on + strand at 224.646 kb on + strand at 224.647 kb on - strand at 224.647 kb on - strand at 224.647 kb on - strand at 224.680 kb on - strand, within fruL at 224.771 kb on + strand at 224.844 kb on + strand, within ilvN at 224.877 kb on + strand, within ilvN at 224.878 kb on - strand, within ilvN at 224.878 kb on - strand, within ilvN at 224.888 kb on + strand, within ilvN at 224.890 kb on + strand, within ilvN at 224.891 kb on - strand, within ilvN at 224.913 kb on - strand, within ilvN at 224.939 kb on + strand, within ilvN at 224.939 kb on + strand, within ilvN at 224.940 kb on - strand, within ilvN at 224.946 kb on - strand, within ilvN at 224.946 kb on - strand, within ilvN at 225.055 kb on + strand, within ilvN at 225.055 kb on + strand, within ilvN at 225.055 kb on + strand, within ilvN at 225.055 kb on + strand, within ilvN at 225.056 kb on - strand, within ilvN at 225.056 kb on - strand, within ilvN at 225.057 kb on + strand, within ilvN at 225.057 kb on + strand, within ilvN at 225.057 kb on + strand, within ilvN at 225.058 kb on - strand, within ilvN at 225.058 kb on - strand, within ilvN at 225.058 kb on - strand, within ilvN at 225.058 kb on - strand, within ilvN at 225.058 kb on - strand, within ilvN at 225.113 kb on + strand, within ilvN at 225.113 kb on + strand, within ilvN at 225.114 kb on - strand, within ilvN at 225.167 kb on - strand, within ilvN at 225.167 kb on - strand, within ilvN at 225.235 kb on - strand at 225.367 kb on + strand at 225.368 kb on - strand at 225.392 kb on - strand at 225.444 kb on + strand, within ilvI at 225.445 kb on - strand, within ilvI at 225.445 kb on - strand, within ilvI at 225.474 kb on - strand, within ilvI at 225.484 kb on + strand, within ilvI at 225.484 kb on + strand, within ilvI at 225.485 kb on - strand, within ilvI at 225.485 kb on - strand, within ilvI at 225.485 kb on - strand, within ilvI at 225.486 kb on + strand, within ilvI at 225.486 kb on + strand, within ilvI at 225.486 kb on + strand, within ilvI at 225.486 kb on + strand, within ilvI at 225.486 kb on + strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.487 kb on - strand, within ilvI at 225.510 kb on + strand, within ilvI at 225.511 kb on - strand, within ilvI at 225.511 kb on - strand, within ilvI at 225.547 kb on - strand, within ilvI at 225.556 kb on + strand, within ilvI at 225.556 kb on + strand, within ilvI at 225.556 kb on + strand, within ilvI at 225.557 kb on - strand, within ilvI at 225.586 kb on - strand, within ilvI at 225.586 kb on - strand, within ilvI at 225.709 kb on + strand, within ilvI at 225.710 kb on - strand, within ilvI at 225.759 kb on + strand, within ilvI at 225.762 kb on + strand, within ilvI at 225.762 kb on + strand, within ilvI at 225.763 kb on - strand, within ilvI at 225.802 kb on + strand, within ilvI at 225.803 kb on - strand, within ilvI at 225.807 kb on + strand, within ilvI at 225.882 kb on + strand, within ilvI at 225.883 kb on - strand, within ilvI at 226.054 kb on + strand, within ilvI at 226.054 kb on + strand, within ilvI at 226.054 kb on + strand, within ilvI at 226.055 kb on - strand, within ilvI at 226.055 kb on - strand, within ilvI at 226.095 kb on + strand, within ilvI at 226.096 kb on - strand, within ilvI at 226.163 kb on - strand, within ilvI at 226.175 kb on - strand, within ilvI at 226.186 kb on - strand, within ilvI at 226.186 kb on - strand, within ilvI at 226.186 kb on - strand, within ilvI at 226.190 kb on - strand, within ilvI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 223,792 - cra MCAODC_01200 0.22 +0.3 223,792 - cra MCAODC_01200 0.22 +0.3 223,792 - cra MCAODC_01200 0.22 -0.1 223,804 + cra MCAODC_01200 0.23 -0.6 223,805 - cra MCAODC_01200 0.23 -0.4 223,919 + cra MCAODC_01200 0.34 -0.4 223,920 - cra MCAODC_01200 0.35 +0.3 224,027 + cra MCAODC_01200 0.45 -2.4 224,027 + cra MCAODC_01200 0.45 +0.6 224,027 + cra MCAODC_01200 0.45 -0.7 224,052 + cra MCAODC_01200 0.48 -1.9 224,053 - cra MCAODC_01200 0.48 +2.9 224,053 - cra MCAODC_01200 0.48 +0.9 224,053 - cra MCAODC_01200 0.48 -0.4 224,053 - cra MCAODC_01200 0.48 -1.8 224,056 + cra MCAODC_01200 0.48 +1.9 224,056 + cra MCAODC_01200 0.48 -0.4 224,057 - cra MCAODC_01200 0.48 -1.0 224,109 + cra MCAODC_01200 0.53 -2.2 224,214 + cra MCAODC_01200 0.64 -0.1 224,237 - cra MCAODC_01200 0.66 -0.7 224,303 + cra MCAODC_01200 0.73 +0.9 224,333 + cra MCAODC_01200 0.76 +1.9 224,334 - cra MCAODC_01200 0.76 -0.1 224,334 - cra MCAODC_01200 0.76 +0.9 224,337 + cra MCAODC_01200 0.76 +1.9 224,352 - cra MCAODC_01200 0.78 +1.9 224,388 + cra MCAODC_01200 0.81 +0.7 224,388 + cra MCAODC_01200 0.81 -0.1 224,388 + cra MCAODC_01200 0.81 +0.3 224,389 - cra MCAODC_01200 0.81 +1.9 224,438 + cra MCAODC_01200 0.86 +0.9 224,438 + cra MCAODC_01200 0.86 +0.6 224,439 - cra MCAODC_01200 0.86 +0.9 224,439 - cra MCAODC_01200 0.86 -0.4 224,495 + -0.7 224,495 + -0.1 224,517 + +0.9 224,517 + -1.9 224,518 - -1.7 224,518 - +0.9 224,522 + +0.3 224,522 + -1.3 224,522 + -0.8 224,523 - -1.7 224,523 - +0.2 224,523 - -0.9 224,523 - -1.6 224,593 - +1.4 224,593 - -0.1 224,646 + -1.1 224,646 + -0.9 224,647 - -0.8 224,647 - +0.9 224,647 - -0.4 224,680 - fruL MCAODC_01205 0.24 -0.1 224,771 + +1.3 224,844 + ilvN MCAODC_01210 0.18 -1.8 224,877 + ilvN MCAODC_01210 0.24 -0.3 224,878 - ilvN MCAODC_01210 0.25 +0.2 224,878 - ilvN MCAODC_01210 0.25 +0.1 224,888 + ilvN MCAODC_01210 0.27 -1.8 224,890 + ilvN MCAODC_01210 0.27 +1.9 224,891 - ilvN MCAODC_01210 0.27 -0.0 224,913 - ilvN MCAODC_01210 0.32 +0.9 224,939 + ilvN MCAODC_01210 0.37 -0.8 224,939 + ilvN MCAODC_01210 0.37 -0.6 224,940 - ilvN MCAODC_01210 0.37 +0.9 224,946 - ilvN MCAODC_01210 0.38 -0.0 224,946 - ilvN MCAODC_01210 0.38 -0.4 225,055 + ilvN MCAODC_01210 0.61 +0.9 225,055 + ilvN MCAODC_01210 0.61 -0.2 225,055 + ilvN MCAODC_01210 0.61 +1.6 225,055 + ilvN MCAODC_01210 0.61 +0.4 225,056 - ilvN MCAODC_01210 0.61 +0.8 225,056 - ilvN MCAODC_01210 0.61 +1.1 225,057 + ilvN MCAODC_01210 0.61 +0.9 225,057 + ilvN MCAODC_01210 0.61 +1.3 225,057 + ilvN MCAODC_01210 0.61 +0.0 225,058 - ilvN MCAODC_01210 0.61 +0.9 225,058 - ilvN MCAODC_01210 0.61 +1.5 225,058 - ilvN MCAODC_01210 0.61 -1.4 225,058 - ilvN MCAODC_01210 0.61 -0.4 225,058 - ilvN MCAODC_01210 0.61 +0.3 225,113 + ilvN MCAODC_01210 0.72 -0.1 225,113 + ilvN MCAODC_01210 0.72 +0.0 225,114 - ilvN MCAODC_01210 0.73 +0.1 225,167 - ilvN MCAODC_01210 0.83 -0.4 225,167 - ilvN MCAODC_01210 0.83 -0.7 225,235 - -0.6 225,367 + +0.7 225,368 - +1.4 225,392 - -1.1 225,444 + ilvI MCAODC_01215 0.11 -0.1 225,445 - ilvI MCAODC_01215 0.11 +1.1 225,445 - ilvI MCAODC_01215 0.11 +0.1 225,474 - ilvI MCAODC_01215 0.13 -0.8 225,484 + ilvI MCAODC_01215 0.14 +1.4 225,484 + ilvI MCAODC_01215 0.14 -0.3 225,485 - ilvI MCAODC_01215 0.14 -0.1 225,485 - ilvI MCAODC_01215 0.14 -0.1 225,485 - ilvI MCAODC_01215 0.14 +1.6 225,486 + ilvI MCAODC_01215 0.14 +1.0 225,486 + ilvI MCAODC_01215 0.14 +1.3 225,486 + ilvI MCAODC_01215 0.14 -0.5 225,486 + ilvI MCAODC_01215 0.14 -0.1 225,486 + ilvI MCAODC_01215 0.14 -0.4 225,487 - ilvI MCAODC_01215 0.14 +1.3 225,487 - ilvI MCAODC_01215 0.14 -0.1 225,487 - ilvI MCAODC_01215 0.14 +0.2 225,487 - ilvI MCAODC_01215 0.14 +1.4 225,487 - ilvI MCAODC_01215 0.14 +0.0 225,487 - ilvI MCAODC_01215 0.14 +0.2 225,487 - ilvI MCAODC_01215 0.14 -0.2 225,487 - ilvI MCAODC_01215 0.14 -1.4 225,510 + ilvI MCAODC_01215 0.15 +1.0 225,511 - ilvI MCAODC_01215 0.15 +0.2 225,511 - ilvI MCAODC_01215 0.15 +0.9 225,547 - ilvI MCAODC_01215 0.17 -0.8 225,556 + ilvI MCAODC_01215 0.18 +0.4 225,556 + ilvI MCAODC_01215 0.18 +0.2 225,556 + ilvI MCAODC_01215 0.18 -0.1 225,557 - ilvI MCAODC_01215 0.18 -2.4 225,586 - ilvI MCAODC_01215 0.19 +0.5 225,586 - ilvI MCAODC_01215 0.19 -0.2 225,709 + ilvI MCAODC_01215 0.27 -1.7 225,710 - ilvI MCAODC_01215 0.27 -0.4 225,759 + ilvI MCAODC_01215 0.29 -0.6 225,762 + ilvI MCAODC_01215 0.30 -0.6 225,762 + ilvI MCAODC_01215 0.30 +0.8 225,763 - ilvI MCAODC_01215 0.30 +0.1 225,802 + ilvI MCAODC_01215 0.32 +0.0 225,803 - ilvI MCAODC_01215 0.32 +0.1 225,807 + ilvI MCAODC_01215 0.32 +1.6 225,882 + ilvI MCAODC_01215 0.37 +0.1 225,883 - ilvI MCAODC_01215 0.37 -0.1 226,054 + ilvI MCAODC_01215 0.47 -1.4 226,054 + ilvI MCAODC_01215 0.47 -1.0 226,054 + ilvI MCAODC_01215 0.47 -1.1 226,055 - ilvI MCAODC_01215 0.47 -1.3 226,055 - ilvI MCAODC_01215 0.47 +0.1 226,095 + ilvI MCAODC_01215 0.49 -2.2 226,096 - ilvI MCAODC_01215 0.49 +1.0 226,163 - ilvI MCAODC_01215 0.53 -0.3 226,175 - ilvI MCAODC_01215 0.54 -0.9 226,186 - ilvI MCAODC_01215 0.54 -1.5 226,186 - ilvI MCAODC_01215 0.54 -0.9 226,186 - ilvI MCAODC_01215 0.54 +0.3 226,190 - ilvI MCAODC_01215 0.54 +2.0
Or see this region's nucleotide sequence