Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF970 and GFF971 are separated by 11 nucleotides GFF971 and GFF972 are separated by 30 nucleotides GFF972 and GFF973 are separated by 61 nucleotides GFF973 and GFF974 overlap by 4 nucleotides
GFF970 - MaoC-like dehydratase, at 707,125 to 707,982
GFF970
GFF971 - Short-chain dehydrogenase/reductase SDR, at 707,994 to 708,914
GFF971
GFF972 - Thiolase precursor, at 708,945 to 710,102
GFF972
GFF973 - hypothetical protein, at 710,164 to 710,571
GFF973
GFF974 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 710,568 to 711,737
GFF974
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -2
-1
0
1 at 707.970 kb on - strand at 708.240 kb on - strand, within GFF971 at 708.352 kb on + strand, within GFF971 at 708.353 kb on - strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 709.035 kb on + strand at 709.099 kb on + strand, within GFF972 at 709.099 kb on + strand, within GFF972 at 709.099 kb on + strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.139 kb on + strand, within GFF972 at 709.261 kb on + strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.398 kb on + strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.636 kb on + strand, within GFF972 at 709.670 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.891 kb on + strand, within GFF972 at 709.924 kb on + strand, within GFF972 at 709.924 kb on + strand, within GFF972 at 709.925 kb on - strand, within GFF972 at 710.330 kb on + strand, within GFF973 at 710.632 kb on + strand at 710.632 kb on + strand at 710.633 kb on - strand at 710.633 kb on - strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.656 kb on + strand at 710.657 kb on - strand at 710.657 kb on - strand at 710.761 kb on + strand, within GFF974 at 710.845 kb on + strand, within GFF974 at 710.846 kb on - strand, within GFF974 at 710.960 kb on - strand, within GFF974 at 710.960 kb on - strand, within GFF974 at 711.035 kb on + strand, within GFF974 at 711.035 kb on + strand, within GFF974
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 707,970 - +0.3 708,240 - GFF971 0.27 -0.1 708,352 + GFF971 0.39 +0.1 708,353 - GFF971 0.39 -0.6 708,415 + GFF971 0.46 -0.1 708,415 + GFF971 0.46 +0.6 708,470 - GFF971 0.52 +0.3 708,470 - GFF971 0.52 -0.2 708,470 - GFF971 0.52 -0.5 708,470 - GFF971 0.52 +0.1 709,035 + -0.4 709,099 + GFF972 0.13 +0.3 709,099 + GFF972 0.13 -0.2 709,099 + GFF972 0.13 +0.6 709,100 - GFF972 0.13 -1.3 709,100 - GFF972 0.13 -0.2 709,100 - GFF972 0.13 +0.2 709,139 + GFF972 0.17 +0.2 709,261 + GFF972 0.27 +0.3 709,262 - GFF972 0.27 +0.0 709,262 - GFF972 0.27 -0.4 709,398 + GFF972 0.39 +0.1 709,399 - GFF972 0.39 -0.1 709,399 - GFF972 0.39 +0.2 709,405 + GFF972 0.40 +1.3 709,405 + GFF972 0.40 +0.4 709,636 + GFF972 0.60 -0.5 709,670 - GFF972 0.63 -0.5 709,697 - GFF972 0.65 +0.1 709,697 - GFF972 0.65 -0.1 709,708 + GFF972 0.66 -0.9 709,708 + GFF972 0.66 +0.2 709,709 - GFF972 0.66 -0.5 709,709 - GFF972 0.66 -1.0 709,709 - GFF972 0.66 -0.3 709,837 + GFF972 0.77 +0.0 709,837 + GFF972 0.77 +0.8 709,837 + GFF972 0.77 -0.3 709,837 + GFF972 0.77 -0.6 709,837 + GFF972 0.77 +1.2 709,838 - GFF972 0.77 +0.5 709,838 - GFF972 0.77 -0.6 709,838 - GFF972 0.77 +0.6 709,891 + GFF972 0.82 -0.8 709,924 + GFF972 0.85 -0.1 709,924 + GFF972 0.85 +0.6 709,925 - GFF972 0.85 +0.7 710,330 + GFF973 0.41 -0.7 710,632 + -0.6 710,632 + -1.5 710,633 - -0.4 710,633 - +0.5 710,656 + -0.6 710,656 + +0.7 710,656 + -0.5 710,656 + +0.3 710,657 - -0.5 710,657 - +0.1 710,761 + GFF974 0.16 -0.1 710,845 + GFF974 0.24 -0.2 710,846 - GFF974 0.24 -0.1 710,960 - GFF974 0.34 -0.4 710,960 - GFF974 0.34 +0.0 711,035 + GFF974 0.40 -2.2 711,035 + GFF974 0.40 -0.7
Or see this region's nucleotide sequence