Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF731 and GFF732 are separated by 36 nucleotides GFF732 and GFF733 are separated by 128 nucleotides
GFF731 - putative exported protein, at 409,986 to 410,972
GFF731
GFF732 - Muconate cycloisomerase (EC 5.5.1.1), at 411,009 to 412,163
GFF732
GFF733 - Transcriptional regulators, LysR family, at 412,292 to 413,179
GFF733
GFF734 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 413,163 to 415,322
GFF734
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 410.077 kb on + strand at 410.078 kb on - strand at 410.078 kb on - strand at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.491 kb on + strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.498 kb on - strand, within GFF731 at 410.790 kb on + strand, within GFF731 at 410.791 kb on - strand, within GFF731 at 411.178 kb on + strand, within GFF732 at 411.530 kb on - strand, within GFF732 at 411.556 kb on + strand, within GFF732 at 411.556 kb on + strand, within GFF732 at 411.557 kb on - strand, within GFF732 at 411.770 kb on - strand, within GFF732 at 412.164 kb on - strand at 412.223 kb on + strand at 412.223 kb on + strand at 412.224 kb on - strand at 412.224 kb on - strand at 412.224 kb on - strand at 412.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 410,077 + -3.0 410,078 - -0.3 410,078 - -0.0 410,200 + GFF731 0.22 +0.3 410,200 + GFF731 0.22 +0.0 410,200 + GFF731 0.22 -0.8 410,201 - GFF731 0.22 +0.7 410,201 - GFF731 0.22 +1.2 410,491 + GFF731 0.51 -0.1 410,492 - GFF731 0.51 -1.1 410,492 - GFF731 0.51 +0.9 410,498 - GFF731 0.52 +0.2 410,790 + GFF731 0.81 +0.6 410,791 - GFF731 0.82 -0.3 411,178 + GFF732 0.15 -1.0 411,530 - GFF732 0.45 -0.5 411,556 + GFF732 0.47 -0.1 411,556 + GFF732 0.47 -0.2 411,557 - GFF732 0.47 -1.6 411,770 - GFF732 0.66 -0.8 412,164 - +0.8 412,223 + +1.0 412,223 + -0.1 412,224 - +0.7 412,224 - -0.4 412,224 - -0.2 412,224 - -2.5
Or see this region's nucleotide sequence