Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5768

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,795,489	+		GFF5767	0.73	-0.4
2,795,489	+		GFF5767	0.73	-0.3
2,795,489	+		GFF5767	0.73	+0.6
2,795,490	-		GFF5767	0.73	-0.3
2,795,490	-		GFF5767	0.73	-0.9
2,795,675	+		GFF5767	0.82	-0.5
2,795,675	+		GFF5767	0.82	+0.8
2,795,676	-		GFF5767	0.82	-0.6
2,795,676	-		GFF5767	0.82	-1.6
2,795,975	+				-1.3
2,795,976	+				-0.4
2,796,316	+		GFF5768	0.22	-6.6
2,796,316	+		GFF5768	0.22	-0.4
2,796,317	-		GFF5768	0.22	-5.1
2,796,889	+		GFF5768	0.69	-5.0
2,796,890	-		GFF5768	0.69	-3.3
2,797,335	+				+0.4
2,797,335	+				-0.2
2,797,335	+				-0.6
2,797,336	-				-1.6
2,797,336	-				+0.7
2,797,389	+		GFF5769	0.11	-0.6
2,797,389	+		GFF5769	0.11	+0.2
2,797,389	+		GFF5769	0.11	-0.1
2,797,390	-		GFF5769	0.11	-0.1
2,797,390	-		GFF5769	0.11	+0.3
2,797,461	+		GFF5769	0.18	-0.2
2,797,519	-		GFF5769	0.23	+0.8
2,797,738	+		GFF5769	0.44	-0.2
2,797,738	+		GFF5769	0.44	-0.1
2,797,739	-		GFF5769	0.44	+0.7
2,797,923	+		GFF5769	0.61	-0.7
2,797,923	+		GFF5769	0.61	-0.8
2,797,923	+		GFF5769	0.61	-1.2
2,797,923	+		GFF5769	0.61	-0.7
2,797,924	-		GFF5769	0.61	-0.4
2,797,924	-		GFF5769	0.61	+0.2
2,797,924	-		GFF5769	0.61	-1.8
2,798,037	+		GFF5769	0.72	+0.3
2,798,037	+		GFF5769	0.72	+0.1
2,798,037	+		GFF5769	0.72	+0.2
2,798,091	+		GFF5769	0.77	+0.4
2,798,092	-		GFF5769	0.77	-1.4
2,798,094	+		GFF5769	0.77	+0.2
2,798,094	+		GFF5769	0.77	+0.6
2,798,095	-		GFF5769	0.77	-1.0
2,798,095	-		GFF5769	0.77	+0.7
2,798,095	-		GFF5769	0.77	-0.2
2,798,095	-		GFF5769	0.77	-0.1
2,798,095	-		GFF5769	0.77	+0.9