Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5643

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,664,429	+				+0.3
2,664,677	+		GFF5642	0.25	+0.6
2,664,678	-		GFF5642	0.25	+1.6
2,664,678	-		GFF5642	0.25	+0.2
2,664,698	+		GFF5642	0.28	+0.0
2,664,698	+		GFF5642	0.28	+0.2
2,664,698	+		GFF5642	0.28	-0.7
2,664,861	-		GFF5642	0.46	-0.4
2,665,188	-		GFF5642	0.84	-1.4
2,665,188	-		GFF5642	0.84	+0.2
2,665,244	+				-0.2
2,665,322	+				-0.1
2,665,322	+				+0.1
2,665,323	-				-0.0
2,665,343	-				-1.8
2,665,343	-				+0.2
2,665,343	-				+0.5
2,665,859	-		GFF5643	0.29	-0.3
2,666,011	+		GFF5643	0.38	-0.0
2,666,431	+		GFF5643	0.61	+0.1
2,666,512	+		GFF5643	0.65	+0.1
2,666,512	+		GFF5643	0.65	-1.6
2,666,588	-		GFF5643	0.69	-1.9
2,666,588	-		GFF5643	0.69	+0.5
2,666,870	-		GFF5643	0.85	+1.3
2,667,047	-				-0.7
2,667,049	+				-1.0
2,667,050	-				+1.4
2,667,288	-		GFF5644	0.14	-0.9
2,667,494	+		GFF5644	0.40	+0.0
2,667,495	-		GFF5644	0.40	-1.1
2,667,732	-		GFF5644	0.71	+0.8
2,667,732	-		GFF5644	0.71	-0.3
2,667,985	+				+0.8
2,668,040	-		GFF5645	0.10	+0.4
2,668,117	+		GFF5645	0.20	+0.2
2,668,117	+		GFF5645	0.20	-0.4
2,668,118	-		GFF5645	0.20	+0.9