Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5388

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,390,109	-				+0.5
2,390,220	+				-0.4
2,390,220	+				-0.2
2,390,221	-				+0.3
2,390,221	-				+0.3
2,390,524	-		GFF5387	0.39	-0.7
2,390,805	+		GFF5387	0.77	+0.8
2,390,805	+		GFF5387	0.77	+0.4
2,391,662	+		GFF5388	0.79	+0.4
2,391,672	-		GFF5388	0.80	+1.0
2,391,896	+				-1.3
2,391,970	+				+0.3
2,392,035	+				+0.2
2,392,228	+				+0.8
2,392,229	-				-0.8
2,392,229	-				+0.1
2,392,403	-		GFF5389	0.15	-0.5
2,392,426	+		GFF5389	0.16	-0.1
2,392,516	+		GFF5389	0.20	-0.1
2,392,657	+		GFF5389	0.27	+0.2
2,392,658	-		GFF5389	0.27	-0.5