Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5197

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,213,392	+				-0.2
2,213,392	+				-0.3
2,213,392	+				-1.3
2,213,392	+				-0.6
2,213,393	-				+0.0
2,213,393	-				-0.6
2,213,393	-				-1.7
2,213,407	+				+1.1
2,213,408	-				+0.1
2,213,984	-				+0.6
2,214,126	+		GFF5197	0.11	-2.1
2,214,126	+		GFF5197	0.11	-0.4
2,214,126	+		GFF5197	0.11	+0.1
2,214,126	+		GFF5197	0.11	-0.2
2,214,126	+		GFF5197	0.11	-0.4
2,214,126	+		GFF5197	0.11	-0.8
2,214,126	+		GFF5197	0.11	-0.3
2,214,126	+		GFF5197	0.11	+0.1
2,214,126	+		GFF5197	0.11	+0.1
2,214,127	-		GFF5197	0.11	+0.1
2,214,127	-		GFF5197	0.11	+0.3
2,214,127	-		GFF5197	0.11	+0.1
2,214,127	-		GFF5197	0.11	-0.4
2,214,330	+		GFF5197	0.40	-0.8
2,214,331	-		GFF5197	0.40	-0.7
2,214,331	-		GFF5197	0.40	-0.4
2,214,331	-		GFF5197	0.40	-0.4
2,214,489	+		GFF5197	0.62	-0.1
2,214,523	-		GFF5197	0.67	-0.8
2,214,798	-				-0.0
2,214,810	-				+0.1
2,214,816	+				-0.2
2,214,862	+				+0.7
2,215,018	+		GFF5198	0.30	-1.0
2,215,069	+		GFF5198	0.39	-0.2
2,215,069	+		GFF5198	0.39	+0.2
2,215,070	-		GFF5198	0.40	-0.3
2,215,070	-		GFF5198	0.40	-0.5
2,215,331	-		GFF5198	0.87	+0.8
2,215,355	-				+0.1
2,215,355	-				+0.0
2,215,458	-				-0.1
2,215,595	+				-0.3
2,215,595	+				-0.0
2,215,596	-				+0.3
2,215,596	-				-0.3
2,215,596	-				-0.3
2,215,596	-				-0.8