Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5068

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,083,030	+		GFF5066	0.60	+0.7
2,083,030	+		GFF5066	0.60	-0.4
2,083,031	-		GFF5066	0.61	+0.4
2,083,031	-		GFF5066	0.61	+0.8
2,083,147	+		GFF5066	0.79	+0.1
2,083,148	-		GFF5066	0.79	+1.2
2,083,286	+				+0.2
2,083,287	-				-1.7
2,083,532	+		GFF5067	0.38	+0.1
2,083,532	+		GFF5067	0.38	+0.2
2,083,532	+		GFF5067	0.38	+0.5
2,083,532	+		GFF5067	0.38	+0.0
2,083,532	+		GFF5067	0.38	+0.1
2,083,733	+		GFF5067	0.69	-0.4
2,084,009	+		GFF5068	0.10	-0.0
2,084,171	-		GFF5068	0.29	-1.9
2,084,384	-		GFF5068	0.54	+0.3
2,084,476	+		GFF5068	0.64	+0.3
2,084,656	+		GFF5068	0.85	+0.1
2,084,656	+		GFF5068	0.85	-0.2
2,084,656	+		GFF5068	0.85	+0.9
2,084,657	-		GFF5068	0.85	+0.2
2,084,943	+				+0.2
2,084,945	-				+0.1
2,084,961	+				-0.6
2,084,961	+				-0.4
2,084,962	-				-0.5
2,085,040	-				-0.8
2,085,054	+				+0.4
2,085,090	+		GFF5069	0.21	+0.5
2,085,091	-		GFF5069	0.22	+0.4
2,085,165	+		GFF5069	0.47	-0.1
2,085,165	+		GFF5069	0.47	-1.6
2,085,166	-		GFF5069	0.47	-0.2
2,085,166	-		GFF5069	0.47	-0.1
2,085,318	+				-1.0
2,085,781	+		GFF5070	0.38	+0.4
2,085,781	+		GFF5070	0.38	-0.2
2,085,782	-		GFF5070	0.39	+1.1
2,085,782	-		GFF5070	0.39	+0.2
2,085,782	-		GFF5070	0.39	+0.7
2,085,782	-		GFF5070	0.39	-1.1