Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5046

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,057,643	-				+0.1
2,057,643	-				+0.4
2,057,643	-				+0.8
2,057,643	-				+1.5
2,057,644	+				+0.4
2,057,645	-				-0.3
2,057,645	-				+0.3
2,057,645	-				-0.0
2,057,646	+				-0.2
2,057,646	+				+0.5
2,057,647	-				-0.0
2,057,647	-				-0.5
2,057,977	-		GFF5045	0.33	-1.0
2,058,129	+		GFF5045	0.50	-0.2
2,058,130	-		GFF5045	0.50	+0.7
2,058,130	-		GFF5045	0.50	-0.9
2,058,333	+		GFF5045	0.72	+0.4
2,058,333	+		GFF5045	0.72	-0.1
2,058,333	+		GFF5045	0.72	+0.0
2,058,333	+		GFF5045	0.72	-0.1
2,058,334	-		GFF5045	0.72	+1.1
2,058,334	-		GFF5045	0.72	+0.3
2,058,427	-		GFF5045	0.83	+1.9
2,058,759	+		GFF5046	0.26	-1.4
2,058,846	+		GFF5046	0.39	+0.3
2,058,847	-		GFF5046	0.39	-0.6
2,059,179	+		GFF5046	0.89	-0.3
2,059,179	+		GFF5046	0.89	+1.2
2,059,179	+		GFF5046	0.89	-0.7
2,059,180	-		GFF5046	0.89	-0.0
2,059,613	+		GFF5047	0.46	-1.5
2,059,613	+		GFF5047	0.46	-0.0
2,059,613	+		GFF5047	0.46	+1.2
2,059,613	+		GFF5047	0.46	+0.1
2,059,614	-		GFF5047	0.46	+0.2
2,059,614	-		GFF5047	0.46	+0.0
2,059,614	-		GFF5047	0.46	-0.4
2,059,614	-		GFF5047	0.46	-0.1
2,059,614	-		GFF5047	0.46	+1.2
2,059,662	-		GFF5047	0.52	-0.3
2,059,719	-		GFF5047	0.59	+0.3
2,059,829	+		GFF5047	0.73	-1.5
2,059,829	+		GFF5047	0.73	+0.5
2,059,829	+		GFF5047	0.73	-0.1
2,059,965	-		GFF5047	0.90	+0.2
2,060,000	+				-0.7