Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4978

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,994,023	+		GFF4976	0.77	+0.8
1,994,024	-		GFF4976	0.77	+0.3
1,994,062	+		GFF4976	0.86	-0.0
1,994,063	-		GFF4976	0.86	+0.8
1,994,063	-		GFF4976	0.86	+0.0
1,994,263	+				+0.5
1,994,264	-				-0.3
1,994,333	+				+0.7
1,994,333	+				+0.8
1,994,525	+		GFF4977	0.21	+0.3
1,994,525	+		GFF4977	0.21	-0.1
1,994,525	+		GFF4977	0.21	-0.3
1,994,525	+		GFF4977	0.21	-0.1
1,994,684	+		GFF4977	0.52	+0.2
1,994,829	-		GFF4977	0.80	+0.2
1,994,829	-		GFF4977	0.80	-0.1
1,995,105	+		GFF4978	0.13	-0.3
1,995,106	-		GFF4978	0.13	-0.2
1,995,106	-		GFF4978	0.13	+0.3
1,995,106	-		GFF4978	0.13	+0.2
1,995,106	-		GFF4978	0.13	-0.6
1,995,106	-		GFF4978	0.13	-0.6
1,995,150	+		GFF4978	0.17	+0.4
1,995,151	-		GFF4978	0.17	+0.1
1,995,151	-		GFF4978	0.17	+0.8
1,995,151	-		GFF4978	0.17	+1.3
1,995,151	-		GFF4978	0.17	-1.0
1,995,151	-		GFF4978	0.17	+0.5
1,995,426	+		GFF4978	0.43	+1.8
1,995,427	-		GFF4978	0.43	-0.1
1,995,513	+		GFF4978	0.51	-1.0
1,995,513	+		GFF4978	0.51	-0.9
1,995,514	-		GFF4978	0.51	+0.2
1,995,514	-		GFF4978	0.51	-0.8
1,995,777	+		GFF4978	0.76	-1.8
1,996,107	+		GFF4979	0.14	-1.0
1,996,378	-		GFF4979	0.43	+0.1
1,996,378	-		GFF4979	0.43	-0.8
1,996,693	-		GFF4979	0.78	-1.6
1,996,772	+		GFF4979	0.87	-0.4
1,996,912	-				+0.7