Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4884

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,893,586	+		GFF4883	0.47	-0.1
1,893,587	-		GFF4883	0.47	-0.0
1,893,649	+		GFF4883	0.51	+0.7
1,893,649	+		GFF4883	0.51	+0.3
1,893,649	+		GFF4883	0.51	-0.3
1,893,650	-		GFF4883	0.51	-0.8
1,893,650	-		GFF4883	0.51	-0.8
1,893,650	-		GFF4883	0.51	+0.2
1,893,685	+		GFF4883	0.53	+0.5
1,893,685	+		GFF4883	0.53	+1.8
1,893,685	+		GFF4883	0.53	+1.1
1,893,685	+		GFF4883	0.53	-0.2
1,893,686	-		GFF4883	0.53	+0.1
1,893,686	-		GFF4883	0.53	-0.3
1,893,686	-		GFF4883	0.53	-1.6
1,893,686	-		GFF4883	0.53	-0.2
1,893,686	-		GFF4883	0.53	+0.2
1,893,686	-		GFF4883	0.53	+0.1
1,893,691	+		GFF4883	0.53	+0.2
1,893,691	+		GFF4883	0.53	-0.6
1,893,691	+		GFF4883	0.53	+0.3
1,893,691	+		GFF4883	0.53	-1.3
1,893,691	+		GFF4883	0.53	-0.8
1,893,692	-		GFF4883	0.53	-1.7
1,893,692	-		GFF4883	0.53	-0.7
1,893,692	-		GFF4883	0.53	+1.5
1,893,692	-		GFF4883	0.53	-2.1
1,893,856	+		GFF4883	0.63	+1.5
1,893,856	+		GFF4883	0.63	-0.7
1,893,856	+		GFF4883	0.63	-0.6
1,893,856	+		GFF4883	0.63	+0.3
1,893,856	+		GFF4883	0.63	+0.3
1,893,856	+		GFF4883	0.63	-0.2
1,893,856	+		GFF4883	0.63	-1.0
1,893,856	+		GFF4883	0.63	-0.1
1,893,857	-		GFF4883	0.63	-0.8
1,893,857	-		GFF4883	0.63	+0.3
1,893,857	-		GFF4883	0.63	+0.0
1,893,884	-		GFF4883	0.65	+2.7
1,893,884	-		GFF4883	0.65	+0.1
1,893,971	-		GFF4883	0.70	-1.3
1,893,994	+		GFF4883	0.71	-0.6
1,893,995	-		GFF4883	0.71	+1.0
1,894,102	+		GFF4883	0.78	+0.2
1,894,103	-		GFF4883	0.78	-0.7
1,894,103	-		GFF4883	0.78	+0.2
1,894,168	+		GFF4883	0.82	+0.4
1,894,168	+		GFF4883	0.82	-0.2
1,894,168	+		GFF4883	0.82	+0.1
1,894,168	+		GFF4883	0.82	+0.1
1,894,168	+		GFF4883	0.82	+0.1
1,894,168	+		GFF4883	0.82	+0.9
1,894,168	+		GFF4883	0.82	+0.4
1,894,169	-		GFF4883	0.82	+0.3
1,894,169	-		GFF4883	0.82	-0.0
1,894,169	-		GFF4883	0.82	-0.6
1,894,169	-		GFF4883	0.82	+0.1
1,894,169	-		GFF4883	0.82	+0.3
1,894,169	-		GFF4883	0.82	+0.8
1,894,235	-		GFF4883	0.86	+0.3
1,894,242	-		GFF4883	0.86	-0.6
1,894,483	+				+0.4
1,894,483	+				-0.2
1,894,483	+				+0.0
1,894,484	-				+1.2
1,894,484	-				+0.2
1,894,549	+				-0.6
1,894,549	+				+1.3
1,894,549	+				+0.7
1,894,549	+				+0.4
1,894,549	+				-1.4
1,894,550	-				-0.6
1,894,550	-				+0.6
1,894,550	-				-0.6
1,894,550	-				+0.6
1,894,622	+		GFF4884	0.13	+0.1
1,894,622	+		GFF4884	0.13	+0.3
1,894,623	-		GFF4884	0.13	+0.1
1,894,623	-		GFF4884	0.13	+0.3
1,894,760	+		GFF4884	0.38	+0.3
1,894,823	+		GFF4884	0.49	+1.8
1,894,823	+		GFF4884	0.49	-0.2
1,894,823	+		GFF4884	0.49	+0.2
1,894,824	-		GFF4884	0.50	+0.5
1,894,967	+		GFF4884	0.76	+0.2
1,894,967	+		GFF4884	0.76	-0.0
1,894,967	+		GFF4884	0.76	+0.3
1,894,967	+		GFF4884	0.76	-0.8
1,894,967	+		GFF4884	0.76	-2.1
1,894,967	+		GFF4884	0.76	-1.1
1,894,967	+		GFF4884	0.76	+0.1
1,894,968	-		GFF4884	0.76	+0.4
1,894,968	-		GFF4884	0.76	-0.5
1,894,968	-		GFF4884	0.76	+1.1
1,894,968	-		GFF4884	0.76	-0.4
1,894,968	-		GFF4884	0.76	-0.3
1,895,043	-		GFF4884	0.89	+0.4
1,895,553	+		GFF4885	0.43	-0.3
1,895,553	+		GFF4885	0.43	+1.7
1,895,553	+		GFF4885	0.43	-0.3
1,895,553	+		GFF4885	0.43	-0.1
1,895,553	+		GFF4885	0.43	+0.9
1,895,554	-		GFF4885	0.43	-0.1
1,895,554	-		GFF4885	0.43	-1.0
1,895,554	-		GFF4885	0.43	-0.2
1,895,554	-		GFF4885	0.43	-0.4
1,895,736	+		GFF4885	0.62	-0.2
1,895,736	+		GFF4885	0.62	-0.5
1,895,736	+		GFF4885	0.62	+0.5
1,895,737	-		GFF4885	0.62	+0.7
1,895,737	-		GFF4885	0.62	+0.3
1,895,737	-		GFF4885	0.62	+0.8
1,895,737	-		GFF4885	0.62	-0.1
1,895,737	-		GFF4885	0.62	+0.4
1,895,762	-		GFF4885	0.64	-0.3
1,895,778	+		GFF4885	0.66	-0.3
1,895,778	+		GFF4885	0.66	+0.2
1,895,778	+		GFF4885	0.66	+0.0
1,895,779	-		GFF4885	0.66	-0.8