Experiment: Ying_Nucleobase14 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF468 and GFF469 are separated by 13 nucleotides GFF469 and GFF470 are separated by 42 nucleotides GFF470 and GFF471 overlap by 1 nucleotides
GFF468 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 132,568 to 133,665
GFF468
GFF469 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 133,679 to 134,785
GFF469
GFF470 - FIG00441296: hypothetical protein, at 134,828 to 135,202
GFF470
GFF471 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 135,202 to 136,596
GFF471
Position (kb) 133
134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 133.241 kb on + strand, within GFF468 at 134.347 kb on - strand, within GFF469 at 134.347 kb on - strand, within GFF469 at 134.481 kb on + strand, within GFF469 at 134.649 kb on + strand, within GFF469 at 134.649 kb on + strand, within GFF469 at 134.670 kb on + strand, within GFF469 at 134.670 kb on + strand, within GFF469 at 134.671 kb on - strand, within GFF469 at 134.964 kb on + strand, within GFF470 at 134.964 kb on + strand, within GFF470 at 135.052 kb on - strand, within GFF470 at 135.147 kb on + strand, within GFF470 at 135.148 kb on - strand, within GFF470 at 135.557 kb on + strand, within GFF471 at 135.558 kb on - strand, within GFF471
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 1 remove 133,241 + GFF468 0.61 +0.6 134,347 - GFF469 0.60 +0.1 134,347 - GFF469 0.60 -0.4 134,481 + GFF469 0.72 +0.7 134,649 + GFF469 0.88 +0.2 134,649 + GFF469 0.88 -0.1 134,670 + GFF469 0.90 -0.4 134,670 + GFF469 0.90 +0.6 134,671 - GFF469 0.90 -0.1 134,964 + GFF470 0.36 -0.1 134,964 + GFF470 0.36 +1.2 135,052 - GFF470 0.60 -1.0 135,147 + GFF470 0.85 -1.2 135,148 - GFF470 0.85 -1.0 135,557 + GFF471 0.25 -1.8 135,558 - GFF471 0.26 -0.2
Or see this region's nucleotide sequence