Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4608

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,551,111	+		GFF4606	0.53	+0.2
1,551,111	+		GFF4606	0.53	-0.2
1,551,111	+		GFF4606	0.53	+0.5
1,551,111	+		GFF4606	0.53	+0.3
1,551,112	-		GFF4606	0.53	-0.4
1,551,112	-		GFF4606	0.53	+1.5
1,551,112	-		GFF4606	0.53	-0.1
1,551,112	-		GFF4606	0.53	+0.8
1,551,156	+		GFF4606	0.58	-1.3
1,551,156	+		GFF4606	0.58	+0.3
1,551,210	+		GFF4606	0.64	-0.0
1,551,211	-		GFF4606	0.64	-0.8
1,551,394	-		GFF4606	0.85	+0.9
1,551,394	-		GFF4606	0.85	+0.5
1,551,394	-		GFF4606	0.85	-0.5
1,551,823	+		GFF4607	0.51	-0.6
1,551,823	+		GFF4607	0.51	-0.0
1,551,824	-		GFF4607	0.51	-0.3
1,551,824	-		GFF4607	0.51	+0.0
1,551,824	-		GFF4607	0.51	-0.3
1,552,143	+				+1.0
1,552,143	+				-0.1
1,552,144	-				-0.4
1,552,198	-		GFF4608	0.11	+0.4
1,552,198	-		GFF4608	0.11	+0.4
1,552,209	+		GFF4608	0.12	-0.4
1,552,209	+		GFF4608	0.12	-0.1
1,552,209	+		GFF4608	0.12	+0.5
1,552,209	+		GFF4608	0.12	-0.1
1,552,209	+		GFF4608	0.12	+0.9
1,552,209	+		GFF4608	0.12	+1.3
1,552,209	+		GFF4608	0.12	+0.2
1,552,209	+		GFF4608	0.12	+0.4
1,552,210	-		GFF4608	0.12	-0.1
1,552,210	-		GFF4608	0.12	+0.3
1,552,210	-		GFF4608	0.12	-0.1
1,552,210	-		GFF4608	0.12	-0.5
1,552,728	+		GFF4608	0.69	-0.2
1,552,728	+		GFF4608	0.69	+0.4
1,552,729	-		GFF4608	0.69	-0.2
1,552,997	+				+0.2
1,552,997	+				-1.3
1,552,997	+				+0.6
1,552,997	+				+0.9
1,552,997	+				-0.5
1,552,997	+				-0.5
1,552,997	+				-0.2
1,553,073	+				+0.5
1,553,074	-				-1.5
1,553,074	-				+0.0
1,553,192	+				-0.0
1,553,193	-				+0.9
1,553,465	+				+0.5
1,553,951	+		GFF4609	0.20	-0.0
1,553,951	+		GFF4609	0.20	+2.1
1,553,952	-		GFF4609	0.20	-0.4
1,553,952	-		GFF4609	0.20	-1.9