Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4564

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,504,994	+		GFF4563	0.65	-3.3
1,504,995	-		GFF4563	0.65	-1.1
1,504,995	-		GFF4563	0.65	-0.8
1,504,995	-		GFF4563	0.65	-1.3
1,504,997	+		GFF4563	0.65	-1.5
1,504,997	+		GFF4563	0.65	+0.5
1,505,339	+		GFF4563	0.78	-1.1
1,505,339	+		GFF4563	0.78	+0.7
1,505,340	-		GFF4563	0.78	-2.7
1,505,870	+				-0.4
1,506,181	-		GFF4564	0.30	+1.8
1,506,348	+		GFF4564	0.51	+0.4
1,506,348	+		GFF4564	0.51	+0.1
1,506,348	+		GFF4564	0.51	+1.0
1,506,349	-		GFF4564	0.51	+1.3
1,506,349	-		GFF4564	0.51	+1.6
1,506,349	-		GFF4564	0.51	+0.2
1,506,429	+		GFF4564	0.60	+0.8
1,506,612	+		GFF4564	0.83	+1.8
1,506,612	+		GFF4564	0.83	+0.8
1,506,612	+		GFF4564	0.83	+1.2
1,506,612	+		GFF4564	0.83	+0.9
1,506,612	+		GFF4564	0.83	+0.9
1,506,613	-		GFF4564	0.83	+0.5
1,506,675	+				+0.4
1,506,675	+				+1.3
1,506,676	-				+1.1
1,506,676	-				+1.3
1,506,741	+				-0.1
1,506,741	+				+1.3
1,506,741	+				+0.9
1,506,742	-				+1.4