Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4559

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,496,020	+		GFF4558	0.86	+0.2
1,496,020	+		GFF4558	0.86	-0.0
1,496,020	+		GFF4558	0.86	-0.7
1,496,021	-		GFF4558	0.86	-0.8
1,496,021	-		GFF4558	0.86	-2.3
1,496,021	-		GFF4558	0.86	-1.0
1,496,266	+				-0.5
1,496,266	+				+0.2
1,496,282	+				+1.5
1,496,375	-				+0.2
1,496,452	+				+0.4
1,496,452	+				-0.2
1,496,513	+				-0.0
1,496,513	+				-0.1
1,496,515	-				+0.6
1,496,518	+				-0.5
1,496,518	+				-0.5
1,496,518	+				-1.6
1,496,518	+				+0.2
1,496,518	+				+0.8
1,496,518	+				-0.1
1,496,519	-				+0.2
1,496,519	-				+0.7
1,496,519	-				-0.0
1,496,519	-				+0.1
1,496,519	-				+0.3
1,496,548	-				-0.2
1,496,569	+				+0.1
1,496,936	+		GFF4559	0.39	+0.7
1,497,081	-		GFF4559	0.66	+0.1
1,497,081	-		GFF4559	0.66	-0.2
1,497,182	+		GFF4559	0.84	+0.4
1,497,183	-		GFF4559	0.85	+0.8
1,497,267	-				-0.9
1,497,278	+				+0.2
1,497,279	-				+0.3
1,497,279	-				+0.2
1,497,279	-				+0.2
1,497,279	-				-1.0
1,497,279	-				+0.3
1,497,279	-				+0.5
1,497,298	-				+0.3
1,497,303	+				-0.4
1,497,304	-				+0.5
1,497,304	-				+1.7
1,497,311	+				-1.3
1,497,311	+				-0.3
1,497,311	+				+0.3
1,497,311	+				+0.0
1,497,312	-				+1.3
1,497,312	-				-0.4
1,497,312	-				+0.5
1,497,328	-				-0.0
1,497,332	+				-0.3
1,497,332	+				-0.3
1,497,332	+				-0.0
1,497,350	+				+0.0
1,497,350	+				+1.1
1,497,350	+				-0.2
1,497,479	+				+0.1
1,497,480	-				-1.1
1,497,480	-				+0.1
1,497,881	+		GFF4560	0.35	+0.3
1,497,881	+		GFF4560	0.35	-1.6
1,497,881	+		GFF4560	0.35	+0.1
1,497,881	+		GFF4560	0.35	+0.1
1,497,881	+		GFF4560	0.35	+0.2
1,497,881	+		GFF4560	0.35	+0.5
1,497,882	-		GFF4560	0.35	-0.4
1,497,882	-		GFF4560	0.35	-0.1
1,497,882	-		GFF4560	0.35	-0.3
1,497,882	-		GFF4560	0.35	-0.3
1,497,882	-		GFF4560	0.35	-1.3
1,498,047	-		GFF4560	0.46	+0.3
1,498,241	+		GFF4560	0.60	+0.7
1,498,241	+		GFF4560	0.60	+0.2
1,498,241	+		GFF4560	0.60	+0.0
1,498,242	-		GFF4560	0.60	-0.3
1,498,242	-		GFF4560	0.60	-1.3