Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4552

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,483,374	+		GFF4551	0.37	-0.3
1,483,404	+		GFF4551	0.39	+0.0
1,483,404	+		GFF4551	0.39	-0.2
1,483,404	+		GFF4551	0.39	+0.2
1,483,404	+		GFF4551	0.39	-2.1
1,483,404	+		GFF4551	0.39	+0.9
1,483,404	+		GFF4551	0.39	+0.9
1,483,404	+		GFF4551	0.39	+0.0
1,483,405	-		GFF4551	0.39	-0.5
1,483,455	+		GFF4551	0.44	+0.6
1,483,608	+		GFF4551	0.57	-0.5
1,483,615	-		GFF4551	0.58	+1.1
1,483,615	-		GFF4551	0.58	-1.1
1,483,812	+		GFF4551	0.75	+0.3
1,483,813	-		GFF4551	0.75	+0.3
1,483,813	-		GFF4551	0.75	+0.6
1,484,047	+				-0.5
1,484,150	+				-0.1
1,484,150	+				-0.2
1,484,151	-				-0.0
1,485,163	+		GFF4553	0.10	-1.0
1,485,163	+		GFF4553	0.10	-1.2
1,485,163	+		GFF4553	0.10	-1.6
1,485,164	-		GFF4553	0.10	-0.9
1,485,164	-		GFF4553	0.10	-0.5
1,485,164	-		GFF4553	0.10	-1.4
1,485,190	+		GFF4553	0.13	+1.1
1,485,190	+		GFF4553	0.13	+0.0
1,485,190	+		GFF4553	0.13	-0.7
1,485,190	+		GFF4553	0.13	+0.3
1,485,190	+		GFF4553	0.13	-0.1
1,485,190	+		GFF4553	0.13	+0.3
1,485,191	-		GFF4553	0.13	-0.2
1,485,191	-		GFF4553	0.13	-0.4
1,485,191	-		GFF4553	0.13	-0.8
1,485,191	-		GFF4553	0.13	-0.6
1,485,191	-		GFF4553	0.13	-1.0
1,485,191	-		GFF4553	0.13	-1.5
1,485,191	-		GFF4553	0.13	-1.2
1,485,191	-		GFF4553	0.13	+0.1
1,485,191	-		GFF4553	0.13	-1.2
1,485,191	-		GFF4553	0.13	-0.5
1,485,191	-		GFF4553	0.13	-0.6
1,485,191	-		GFF4553	0.13	-0.9
1,485,191	-		GFF4553	0.13	+0.3
1,485,280	+		GFF4553	0.20	-1.5
1,485,281	-		GFF4553	0.20	+0.1
1,485,281	-		GFF4553	0.20	-0.6
1,485,281	-		GFF4553	0.20	-0.1
1,485,445	+		GFF4553	0.33	-1.0
1,485,446	-		GFF4553	0.33	-0.7
1,485,446	-		GFF4553	0.33	-0.3
1,485,446	-		GFF4553	0.33	+0.6
1,485,446	-		GFF4553	0.33	-0.8
1,485,454	+		GFF4553	0.34	-0.3
1,485,625	+		GFF4553	0.48	-0.8
1,485,625	+		GFF4553	0.48	+1.3
1,485,626	-		GFF4553	0.48	-0.7
1,485,626	-		GFF4553	0.48	-0.8
1,485,637	+		GFF4553	0.49	-0.4
1,485,637	+		GFF4553	0.49	-0.3
1,485,637	+		GFF4553	0.49	+0.1
1,485,637	+		GFF4553	0.49	-0.7
1,485,638	-		GFF4553	0.49	-0.8
1,485,638	-		GFF4553	0.49	-1.6
1,485,832	+		GFF4553	0.65	+0.1
1,485,832	+		GFF4553	0.65	-0.6
1,485,832	+		GFF4553	0.65	+0.2
1,485,832	+		GFF4553	0.65	-1.5
1,485,832	+		GFF4553	0.65	-1.3
1,485,833	-		GFF4553	0.65	+0.7
1,485,833	-		GFF4553	0.65	-0.7
1,485,833	-		GFF4553	0.65	-1.0
1,485,833	-		GFF4553	0.65	-0.3
1,485,833	-		GFF4553	0.65	+0.7
1,485,833	-		GFF4553	0.65	-0.4
1,485,834	-		GFF4553	0.65	-1.8
1,485,834	-		GFF4553	0.65	-1.1
1,485,835	+		GFF4553	0.65	-0.3
1,485,836	-		GFF4553	0.65	-0.5
1,485,836	-		GFF4553	0.65	-0.8
1,485,836	-		GFF4553	0.65	-0.5
1,485,836	-		GFF4553	0.65	-0.6
1,485,836	-		GFF4553	0.65	+0.3
1,485,836	-		GFF4553	0.65	-0.6
1,485,836	-		GFF4553	0.65	-0.5
1,485,871	+		GFF4553	0.68	-0.7
1,485,871	+		GFF4553	0.68	-1.8
1,485,871	+		GFF4553	0.68	+1.1
1,485,871	+		GFF4553	0.68	+0.5
1,485,871	+		GFF4553	0.68	-0.2
1,485,872	-		GFF4553	0.68	-0.3
1,485,872	-		GFF4553	0.68	-0.7
1,485,872	-		GFF4553	0.68	+0.3
1,485,872	-		GFF4553	0.68	-0.9
1,485,872	-		GFF4553	0.68	-0.6