Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4494

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,419,262	+		GFF4493	0.47	+0.1
1,419,262	+		GFF4493	0.47	-2.5
1,419,263	-		GFF4493	0.47	-1.5
1,419,379	+		GFF4493	0.56	-1.5
1,419,380	-		GFF4493	0.56	+0.5
1,419,380	-		GFF4493	0.56	-1.2
1,419,439	+		GFF4493	0.61	-1.2
1,419,439	+		GFF4493	0.61	-2.9
1,419,439	+		GFF4493	0.61	-0.2
1,419,440	-		GFF4493	0.61	+0.2
1,419,440	-		GFF4493	0.61	-3.1
1,419,440	-		GFF4493	0.61	+0.9
1,419,440	-		GFF4493	0.61	-0.2
1,419,683	-		GFF4493	0.80	-0.5
1,419,916	+				-1.4
1,419,916	+				-0.3
1,419,917	-				-1.3
1,419,917	-				+0.3
1,420,114	+		GFF4494	0.13	+0.7
1,420,114	+		GFF4494	0.13	+0.0
1,420,114	+		GFF4494	0.13	-1.0
1,420,114	+		GFF4494	0.13	+0.1
1,420,115	-		GFF4494	0.13	-0.3
1,420,115	-		GFF4494	0.13	-0.1
1,420,115	-		GFF4494	0.13	-1.1
1,420,123	+		GFF4494	0.14	-0.0
1,420,124	-		GFF4494	0.14	+0.3
1,420,192	+		GFF4494	0.21	+0.4
1,420,192	+		GFF4494	0.21	+0.1
1,420,192	+		GFF4494	0.21	-0.3
1,420,286	-		GFF4494	0.29	+1.2
1,420,504	+		GFF4494	0.49	+0.6
1,420,504	+		GFF4494	0.49	-0.2
1,420,505	-		GFF4494	0.49	-0.7
1,420,505	-		GFF4494	0.49	+0.2
1,420,540	+		GFF4494	0.53	-0.4
1,420,541	-		GFF4494	0.53	+0.4
1,420,541	-		GFF4494	0.53	+0.1
1,420,627	+		GFF4494	0.61	+0.3
1,420,628	-		GFF4494	0.61	+1.0
1,420,628	-		GFF4494	0.61	+0.7
1,420,708	+		GFF4494	0.68	-0.2
1,420,709	-		GFF4494	0.68	-0.8
1,420,709	-		GFF4494	0.68	+0.2
1,420,709	-		GFF4494	0.68	+1.9
1,420,709	-		GFF4494	0.68	-0.3
1,420,870	+		GFF4494	0.83	+0.2
1,420,871	-		GFF4494	0.83	+0.1
1,420,871	-		GFF4494	0.83	+0.5
1,420,871	-		GFF4494	0.83	+0.0
1,420,871	-		GFF4494	0.83	-0.4
1,420,897	+		GFF4494	0.85	+0.4
1,420,898	-		GFF4494	0.86	-0.0
1,420,898	-		GFF4494	0.86	-0.3
1,420,898	-		GFF4494	0.86	-0.2
1,421,330	+		GFF4495	0.29	-0.0
1,421,330	+		GFF4495	0.29	-0.4
1,421,331	-		GFF4495	0.29	+0.5
1,421,331	-		GFF4495	0.29	-0.2
1,421,331	-		GFF4495	0.29	+0.9
1,421,453	+		GFF4495	0.46	+0.2
1,421,453	+		GFF4495	0.46	-0.4
1,421,454	-		GFF4495	0.47	+0.0
1,421,454	-		GFF4495	0.47	-0.6
1,421,532	-		GFF4495	0.57	+0.6
1,421,600	+		GFF4495	0.67	-0.7
1,421,600	+		GFF4495	0.67	+0.0
1,421,600	+		GFF4495	0.67	-0.1
1,421,600	+		GFF4495	0.67	-0.2
1,421,600	+		GFF4495	0.67	+1.5
1,421,600	+		GFF4495	0.67	+0.6
1,421,600	+		GFF4495	0.67	-0.3
1,421,600	+		GFF4495	0.67	+0.0
1,421,601	-		GFF4495	0.67	+0.7
1,421,601	-		GFF4495	0.67	+0.1
1,421,907	+				+0.0
1,421,908	-				+0.3