Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4274

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,198,369	+				+0.1
1,198,369	+				-0.1
1,198,369	+				-0.3
1,198,369	+				-0.1
1,198,369	+				+0.3
1,198,369	+				-0.4
1,198,540	-		GFF4272	0.40	-0.5
1,198,554	+		GFF4272	0.44	-0.3
1,198,554	+		GFF4272	0.44	-0.1
1,198,554	+		GFF4272	0.44	+0.6
1,198,554	+		GFF4272	0.44	+0.3
1,198,555	-		GFF4272	0.45	-0.3
1,198,555	-		GFF4272	0.45	+0.0
1,198,921	+		GFF4273	0.27	+0.2
1,198,921	+		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	-0.9
1,198,922	-		GFF4273	0.27	-0.6
1,198,922	-		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	-0.3
1,198,922	-		GFF4273	0.27	-0.5
1,198,922	-		GFF4273	0.27	+0.1
1,198,922	-		GFF4273	0.27	-1.1
1,199,224	+		GFF4273	0.79	-0.7
1,199,224	+		GFF4273	0.79	-0.2
1,199,225	-		GFF4273	0.79	+0.5
1,199,225	-		GFF4273	0.79	-1.5
1,199,317	+				+0.1
1,199,317	+				-0.6
1,199,317	+				-2.3
1,199,318	-				-0.5
1,199,318	-				+0.0
1,199,318	-				+0.1
1,199,318	-				-1.6
1,199,320	-				+0.4
1,199,682	+		GFF4274	0.81	-0.4
1,199,683	-		GFF4274	0.81	-0.4
1,199,987	+		GFF4275	0.46	+0.0
1,199,987	+		GFF4275	0.46	+0.5
1,199,987	+		GFF4275	0.46	-0.2
1,199,987	+		GFF4275	0.46	-0.1
1,199,987	+		GFF4275	0.46	-0.7
1,199,988	-		GFF4275	0.46	+0.1
1,200,098	+		GFF4275	0.69	-0.8
1,200,098	+		GFF4275	0.69	-0.1
1,200,098	+		GFF4275	0.69	+1.0
1,200,098	+		GFF4275	0.69	+0.3
1,200,098	+		GFF4275	0.69	+0.7
1,200,098	+		GFF4275	0.69	-1.4
1,200,099	-		GFF4275	0.69	+0.2
1,200,099	-		GFF4275	0.69	-0.5
1,200,099	-		GFF4275	0.69	+0.3
1,200,099	-		GFF4275	0.69	-0.4
1,200,099	-		GFF4275	0.69	-0.4
1,200,099	-		GFF4275	0.69	+0.2
1,200,185	+		GFF4275	0.88	-0.2
1,200,185	+		GFF4275	0.88	+0.7
1,200,186	-		GFF4275	0.88	-0.1
1,200,186	-		GFF4275	0.88	-0.3
1,200,227	+				+0.4
1,200,227	+				+0.4
1,200,228	-				-0.1
1,200,228	-				+0.5
1,200,228	-				+0.5
1,200,228	-				-0.2
1,200,228	-				+0.4
1,200,228	-				+1.2
1,200,228	-				-0.2
1,200,409	+				-0.6
1,200,411	-				-0.6
1,200,499	+				+0.7
1,200,499	+				-0.6
1,200,499	+				-0.7
1,200,500	-				-3.0
1,200,500	-				-1.5
1,200,500	-				+0.0
1,200,500	-				-1.0
1,200,500	-				-1.2
1,200,500	-				-3.1
1,200,500	-				-1.0