Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4271

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
1,195,720	+		GFF4270	0.25	-0.6
1,195,721	-		GFF4270	0.25	+0.1
1,195,721	-		GFF4270	0.25	+0.0
1,195,804	+		GFF4270	0.32	+1.2
1,195,805	-		GFF4270	0.32	+0.0
1,195,852	+		GFF4270	0.36	+0.9
1,195,876	+		GFF4270	0.38	-1.3
1,195,876	+		GFF4270	0.38	-0.2
1,195,877	-		GFF4270	0.38	+0.5
1,195,889	-		GFF4270	0.39	+2.1
1,195,889	-		GFF4270	0.39	+0.0
1,195,897	+		GFF4270	0.40	-0.6
1,195,898	-		GFF4270	0.40	+0.7
1,195,898	-		GFF4270	0.40	-0.2
1,196,291	-		GFF4270	0.74	-0.1
1,196,293	+		GFF4270	0.74	+0.8
1,196,293	+		GFF4270	0.74	-0.1
1,196,293	+		GFF4270	0.74	+1.3
1,196,294	-		GFF4270	0.74	+0.3
1,196,294	-		GFF4270	0.74	-0.7
1,196,294	-		GFF4270	0.74	-0.1
1,196,294	-		GFF4270	0.74	+0.8
1,196,294	-		GFF4270	0.74	-0.2
1,196,294	-		GFF4270	0.74	+0.6
1,196,294	-		GFF4270	0.74	-0.9
1,196,294	-		GFF4270	0.74	+1.5
1,196,314	+		GFF4270	0.76	+0.6
1,196,315	-		GFF4270	0.76	+0.9
1,196,344	+		GFF4270	0.78	-0.0
1,196,344	+		GFF4270	0.78	+0.2
1,196,345	-		GFF4270	0.78	+0.8
1,196,353	+		GFF4270	0.79	-1.8
1,196,353	+		GFF4270	0.79	+1.1
1,196,371	+		GFF4270	0.81	-0.4
1,196,371	+		GFF4270	0.81	-0.4
1,196,371	+		GFF4270	0.81	-0.0
1,196,372	-		GFF4270	0.81	+0.2
1,196,372	-		GFF4270	0.81	-0.5
1,196,479	+		GFF4270	0.90	+0.1
1,196,480	-		GFF4270	0.90	+0.4
1,196,480	-		GFF4270	0.90	-1.5
1,196,480	-		GFF4270	0.90	+0.7
1,196,480	-		GFF4270	0.90	-0.3
1,196,480	-		GFF4270	0.90	-2.2
1,196,480	-		GFF4270	0.90	+0.9
1,196,581	+				-0.5
1,196,581	+				+0.0
1,196,582	-				+0.4
1,196,582	-				-0.5
1,196,582	-				-0.1
1,196,582	-				-0.6
1,196,972	+		GFF4271	0.18	+0.6
1,196,972	+		GFF4271	0.18	-0.4
1,196,973	-		GFF4271	0.18	+0.1
1,196,973	-		GFF4271	0.18	+0.5
1,197,023	+		GFF4271	0.21	+0.8
1,197,023	+		GFF4271	0.21	-0.6
1,197,023	+		GFF4271	0.21	-0.6
1,197,023	+		GFF4271	0.21	-0.1
1,197,023	+		GFF4271	0.21	-0.2
1,197,047	+		GFF4271	0.23	-1.7
1,197,048	-		GFF4271	0.23	-0.3
1,197,072	-		GFF4271	0.24	+0.5
1,197,296	+		GFF4271	0.38	+0.1
1,197,296	+		GFF4271	0.38	-0.5
1,197,297	-		GFF4271	0.38	+0.5
1,197,297	-		GFF4271	0.38	-0.5
1,197,522	-		GFF4271	0.51	+0.4
1,197,522	-		GFF4271	0.51	+0.4
1,197,522	-		GFF4271	0.51	-1.6
1,197,653	+		GFF4271	0.59	-0.8
1,197,654	-		GFF4271	0.59	-0.1
1,197,908	+		GFF4271	0.74	-1.6
1,197,909	-		GFF4271	0.74	-0.1
1,197,909	-		GFF4271	0.74	-1.5
1,197,920	+		GFF4271	0.75	-0.7
1,197,920	+		GFF4271	0.75	+0.5
1,197,920	+		GFF4271	0.75	-1.5
1,197,920	+		GFF4271	0.75	-1.6
1,197,920	+		GFF4271	0.75	-1.3
1,198,013	+		GFF4271	0.81	-1.2
1,198,142	+		GFF4271	0.88	-1.1
1,198,142	+		GFF4271	0.88	-0.9
1,198,143	-		GFF4271	0.89	-0.8
1,198,143	-		GFF4271	0.89	+0.5
1,198,143	-		GFF4271	0.89	+0.2
1,198,143	-		GFF4271	0.89	-1.9
1,198,143	-		GFF4271	0.89	+0.4
1,198,238	+				-0.7
1,198,238	+				-0.3
1,198,239	-				-0.2
1,198,322	+				+0.9
1,198,322	+				+0.9
1,198,323	-				-0.7
1,198,355	+				+0.3
1,198,355	+				-0.6
1,198,356	-				-1.8
1,198,356	-				-1.5
1,198,369	+				+0.1
1,198,369	+				-0.1
1,198,369	+				-0.3
1,198,369	+				-0.1
1,198,369	+				+0.3
1,198,369	+				-0.4
1,198,540	-		GFF4272	0.40	-0.5
1,198,554	+		GFF4272	0.44	-0.3
1,198,554	+		GFF4272	0.44	-0.1
1,198,554	+		GFF4272	0.44	+0.6
1,198,554	+		GFF4272	0.44	+0.3
1,198,555	-		GFF4272	0.45	-0.3
1,198,555	-		GFF4272	0.45	+0.0
1,198,921	+		GFF4273	0.27	+0.2
1,198,921	+		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	-0.9
1,198,922	-		GFF4273	0.27	-0.6
1,198,922	-		GFF4273	0.27	-0.2
1,198,922	-		GFF4273	0.27	-0.3
1,198,922	-		GFF4273	0.27	-0.5
1,198,922	-		GFF4273	0.27	+0.1
1,198,922	-		GFF4273	0.27	-1.1
1,199,224	+		GFF4273	0.79	-0.7
1,199,224	+		GFF4273	0.79	-0.2
1,199,225	-		GFF4273	0.79	+0.5
1,199,225	-		GFF4273	0.79	-1.5
1,199,317	+				+0.1
1,199,317	+				-0.6
1,199,317	+				-2.3
1,199,318	-				-0.5
1,199,318	-				+0.0
1,199,318	-				+0.1
1,199,318	-				-1.6
1,199,320	-				+0.4